Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq12 248 1e-60 seq23 241 2e-58 >seq12 Length=1129233 Score = 248 bits (274), Expect = 1e-60 Identities = 747/1140 (66%), Gaps = 20/1140 (2%) Strand=Plus/Minus Query 69349 TTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATA 69408 ||||| || |||| || || || ||||||||| ||||||| || |||||||| || || Sbjct 52960 TTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAGAGCATG 52901 Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTT 69468 || |||||||| |||||| |||| | ||| | ||| | ||| | | ||| || Sbjct 52900 AATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCTGAGCCTTG 52841 Query 69469 ATTACGGT-CTTGTAACGCTTCTCTT--TTTCATATTGTGTATATA--GCCGTTCGAATT 69523 | |||| | | || ||| || || | || || | || |||| ||| || || | Sbjct 52840 A---CGGTACGTCTACCGCGTCCCTCCCTCTCGTAACGCGTGTATAAGGCC--TCAAACT 52786 Query 69524 CATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACAT 69583 | ||||| | || ||| | || ||| ||| ||| | | | | ||| | Sbjct 52785 CGTCTCCGTACACGTCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGAC 52726 Query 69584 CATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTC 69643 | | | || ||| || ||||| || | ||||||||||| || ||| || | ||| | Sbjct 52725 CGTTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATCAC 52666 Query 69644 TGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAG 69703 || | |||| || || || ||| ||| | | ||| | || || | || || | Sbjct 52665 GGGCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGTCTG 52606 Query 69704 AATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTA 69763 ||||||||||| | ||| | || ||| | || |||| ||| || ||||| || || | Sbjct 52605 CGTGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTGTTACCTCCTTGGTCGA 52546 Query 69764 TGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCAT 69823 ||||||||||||||| || | || | | ||| |||||||||||||| || |||| | Sbjct 52545 CGTATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTACCGT 52486 Query 69824 TTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTC 69883 | || || | || ||| || | || |||| || |||| | ||| || || | Sbjct 52485 TGGTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAATATGCATACCAATACCGC 52426 Query 69884 CTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTAT 69943 | || | || || || | ||||| |||||| || || || || || || || || Sbjct 52425 CGGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATAGAAT 52366 Query 69944 CATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAA 70003 | || |||| || | ||| ||| |||||| || ||||| || |||||||| | Sbjct 52365 CGTCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCATTGA 52306 Query 70004 ATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAG 70063 | || || ||||| ||||| ||||| | || || | || || || || || || Sbjct 52305 ACAAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTCGATGA 52246 Query 70064 CTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGT 70122 || | ||||| ||| ||||||||| | || || | ||| | || ||| || ||| Sbjct 52245 CTCTTGGGATATCGTCAC-CATGAATTCCGACGGCAACTCTCATAATCAGATGTTGTGGT 52187 Query 70123 CGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCA 70182 | ||| | |||| ||| ||| |||| || || || |||| ||||| || ||| Sbjct 52186 CTCTCTGCAACTTTACCATTGATTCTCAATAGATAGGAACGCTCCAAGGTTTTGAAACCA 52127 Query 70183 AAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATAT 70242 || |||||||| ||||| | |||||| |||| |||| || | | ||| || | | Sbjct 52126 AAGTAGTTGTAGTTGAAGTCACGGTCGTAATTAATGGCAGAGTTCAACTCATCTTTGTGT 52067 Query 70243 TTGGTAACTATATCCATAACAGTAGGT---GAGATAATCGGAGATCGTTTACCATTTTTA 70299 | | ||| | | |||| ||| || |||| || ||| || || |||| Sbjct 52066 CTCATCACTGTGT-CATA--GGTAAGTTGCGAGACCATAGGACATGCCTTCTTGGTTTTC 52010 Query 70300 GGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTG 70359 |||||| || || | | || | | ||||| || ||||| ||||| | |||| Sbjct 52009 GGATTATAGTAACTGTAGAGCTCCTGGACAACATCCGAGAAGAGTTTCTTTGTCTGCTTG 51950 Query 70360 TGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTA 70419 || ||||| || ||||| | |||||| || | ||| ||||| |||||||| ||||| Sbjct 51949 TGCAAATTCGAAATGGCGAGTCTGGCGGCCAAAATGGCATAATCAGGATGGATCGTAGT- 51891 Query 70420 CAAGTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATA 70478 || ||| || || | || || | || |||||||||| | || ||||| || | ||| Sbjct 51890 CATGTACGCAGCGGTCTCAGCTGTCAAATTATCTAATTCAACTGTGGTAACCCCCTCATA 51831 Score = 167 bits (184), Expect = 3e-36 Identities = 1008/1586 (64%), Gaps = 72/1586 (5%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 ||||||| ||| | | ||||| | | || | |||||| |||||||| || || || Sbjct 996503 GTAAACTTAATCGCTTGTGATGCAGCCTGCGTCCTTAGATAATACATACCTGTCTTAAGT 996562 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGA-AT--AACTTGGATCGGCT 68490 || |||| | ||||||||||| || || || || || || ||| | | || | Sbjct 996563 CCCTTCTTCCAAGCATAGAAATGCATGCTGGTAAGCTTTGACATGGAACAGGTA-CG--T 996619 Query 68491 ATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTT 68550 | || || ||||| ||| |||||| ||| | | |||||||||| ||||| | Sbjct 996620 AAATAAAGATTCAGACTTTGCGATTGATCAATGTATGGAGCTCTATCTGCTGCCATATCA 996679 Query 68551 ATAAT-ACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 || || ||||| | | | || ||||| | || | | || | || || | ||| Sbjct 996680 ATGATTACTCTCT-GTGATATCTCCCATACTGTTCGATACATATCCTTCATGAATTGTGG 996738 Query 68610 AAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATTAT---ATTCTTGATCTC 68663 || || ||| |||||| |||||| ||| | || ||| || |||||| || Sbjct 996739 AATAGACGAGATATCTTGAATCGATCCAT--TCGC-TGCAACTATCTGATCCTTGATTTC 996795 Query 68664 ATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAA 68723 ||||||||| | |||| | ||| | || ||||| ||||||| | ||| Sbjct 996796 TCGGTTCCACAATCCTTTCTCAATCAAATCATCAACGAGATAATGATTAACCACCTGATG 996855 Query 68724 TTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 68783 || |||||||||||||| || || || | || ||| ||| || | ||||| | Sbjct 996856 CTCTCCAGATAACACTCTTCGCGTATACACGTTGGAGGTTATTGGCTCAAAGCATTCAGT 996915 Query 68784 ATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCT 68843 ||| ||||| || | |||||||||||| ||||| |||||| ||||| ||| || Sbjct 996916 GAATCCTAGAATCTGTGAAGTTGATGCAGTCGGCATTAATGCCACTAATAATGAATTCCT 996975 Query 68844 AAGACCATGTGTTATGA-TTTTATCTTTTAGATGTTTCCAATCCCAAA--GA-----TCA 68895 | |||| || |||| |||| || || | ||||||||||| | || || Sbjct 996976 TAATCCATATGA-ATGAATTTTTTCCTTCAATCCCTTCCAATCCCATAATGACTCTGTCT 997034 Query 68896 GATGGTACAACATTCC-----AAAGATCGTATTGTAGAATTCCGTTACTTGCATATG--- 68947 | | | ||||| | | ||| ||||| || ||||| ||| | | || Sbjct 997035 CTTTGGGCTGGATTCCTGGCCACATATCATATTGAAGTATTCC---ACTAGAAATTGGGG 997091 Query 68948 ATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATG 69007 |||| | ||| ||||||| || ||||| | ||| || || | ||| || || | Sbjct 997092 ATCCCTCATAGCTTTCATATGGCCCTTCTTTCATAGCAAGCTCCATAGATGCTTCCAAGG 997151 Query 69008 CACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGC-TTCTAGACTATCG 69066 | || | ||| || |||| ||| |||| | |||||| || | || |||| |||| | Sbjct 997152 CCCCATGATAGATGGTTTGGAAGATCTCCAAATTGAG-TCGTCTGGATTCTCGACTTCCA 997210 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || | | | || ||| |||||||| | ||||||||| |||| | | || || Sbjct 997211 AACGGTAACTTCATTTCAAAAAACGCATCTGCAAGTCCCTGAACTCCAACAGCAATTGGC 997270 Query 69127 CTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 69186 || || || |||| || ||| |||| | |||||| | |||||| | Sbjct 997271 CTGTGCTTCATATTAGAGACCTCACATTCTTTCAGAGGATATGCTCCGACATCTATGACC 997330 Query 69187 TTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT--- 69243 ||| ||||| | || | ||||| ||| | ||||| | | || |||| Sbjct 997331 CGATTGAGATTATGAACAAGAACTTTGGTCACAGAATGGAGTTTCCGGAGATTAAATGTT 997390 Query 69244 ---CGTCCATCTATAACA-----AACATATTCAG----TGCTACAGATGCTAGATTACAA 69291 |||||||| || | |||||| || | ||| || || | |||||| Sbjct 997391 GGCCGTCCATCACTAGCCCTCTCAACATAACTAGGTAATCCTAACGAGGCCAAATTACAT 997450 Query 69292 ACTGCTACCTCAT---TAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACAT 69348 || || | |||| | || || ||||| | | ||| || ||||| || Sbjct 997451 ACGGCAATTTCATCCTTCGA---TGAATATTCAACAACCTCACAGCAAAGATTCGAGGAT 997507 Query 69349 TTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATA 69408 ||||| || |||| || || || || ||| ||| ||||| ||||| ||||| | Sbjct 997508 TTGATGGTTCCCAAGTTCTGTTGGTTCGACTTGGAGTTGCAGGCATCCTTATAAAGCAAG 997567 Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTT 69468 || ||||| || |||||| |||| || | || | ||| || | ||| | Sbjct 997568 AAAGGAGTTCCTGTTTCAGTCTGTGAAATTAGGATCTTCTCCCACACTTTACGAGCCCTC 997627 Query 69469 A--TTACGGTCTTGTAACGCTTCTCTTT-TTCATATTGTGTA-TATAGCCGTTCGAATTC 69524 | | ||| | ||| | | | | |||||||| || | || || |||| || Sbjct 997628 ACCTGACGAA--TATAA-GATCCCCGCGATTCATATT-TGCAGTAGAGTTGTTCAAAGGA 997683 Query 69525 ATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATC 69584 | ||||||| ||| ||||||||||| || | | || |||||| || Sbjct 997684 TTTTCCCCAACAGTCAGATAATCCAGGACAGGTATCCTCCGAAAACAGGCTCCACACTTC 997743 Query 69585 ATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTC 69643 ||| | | || |||||||| || | ||| || ||||||||||| ||| || || || | Sbjct 997744 ATCGTTTTCCACACGTTTCATGAACAAATCTGGGATCCAAAGAGC-ATAGAATAGGTCCC 997802 Query 69644 TGGTTCTATTTTCTTCATTTCC-TGTAttttttttAAGATCGAGAAACTCCATAATATCA 69702 ||| || | ||||| || || || | ||||| ||| || | || ||||| ||||| Sbjct 997803 TGGCCCTCATCTCTTCCTTACCGTGGTTCTTTTTCAAG-TCTAAGAATTCCATGATATCC 997861 Query 69703 GAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCT 69762 | |||||| ||||||||||| || | || ||||||||||| || ||||| || Sbjct 997862 GCATGCCACGGTTCTAGATAGGCACAGATAGCACCAGGTCGTTTATTACCACCCTGGTCA 997921 Query 69763 ATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCA 69822 | ||| || || | || |||||| |||||| || | ||| ||| | |||| ||| Sbjct 997922 ACATATTGAGCGGTACTGTTGAAGACTCGCAGCATAGGCACAATTCCACTTGATTCTCCA 997981 Query 69823 TTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCT 69882 || || || || ||||| ||||| ||| | | ||| || | | | ||| ||||| Sbjct 997982 TTGGTACCCGATATATAGGTTCCTGCTGCCCTTACATTGCTTAAATGCATACCAATTCCA 998041 Query 69883 CCTGCCATTTTAGAGATTAGAGCACA 69908 || || ||| || || | |||||| Sbjct 998042 CCGGCAGCTTTCGATATCATAGCACA 998067 >seq23 Length=838141 Score = 241 bits (266), Expect = 2e-58 Identities = 604/908 (67%), Gaps = 11/908 (1%) Strand=Plus/Minus Query 39303 CTTCTTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAG 39362 || |||| ||||| || || || ||||| || ||| | || ||||| || || | Sbjct 743057 CTCCTTG-GACATGACACCTGCCTTCTGGTAATCGGAAACCCTCTTTTCGAAGAAGTTCG 742999 Query 39363 TTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAttttt 39422 | || || ||||||| || |||||||||||||| || ||||| || || || || || Sbjct 742998 TCTTTCCAGCCAATGAGATGTTTTCCATGAAATCGAATGGATTTGTAGCGTTGTAGACTT 742939 Query 39423 ttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCA 39482 | | | |||| | |||||| || ||| || || | ||| | ||||| Sbjct 742938 TGTCGCAGCCTAGGGAGAGTAACAATCTGTCGGCACAGAAGTCAACATATTGATACATCA 742879 Query 39483 TTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTC-CGTTAGAAACTCTTTTTCG 39541 | ||||||||||| || | ||| ||| |||| || || | ||||| || ||||| Sbjct 742878 TATCACAATTCATACCCAAGAGAGAAACAGGTAATGCATCTCTCCAGAAAGTC-TTTTCA 742820 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAA 39601 || || || || || || || ||| || | | | | | | || || || ||| Sbjct 742819 ATATCCACAGCTTCAGTCATGATCTTGGTGATGATTTTCTTATTAGGAGGGTGTTTCAAA 742760 Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 || || | || ||||||||| || ||||| || || ||||| | || | |||| Sbjct 742759 TGAGAGAATAATAGGCAGGCGAAATCGGTATGTAAACCTTCGTCTCTGCAGATAAGTTCG 742700 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 || || || || || || ||||| | ||| | ||| || |||||||| ||||| ||||| Sbjct 742699 TTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTTCTTTAGCCAAAAGATGGCCGCAAAT 742640 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT 39781 || || || ||||||| ||||| | || || || || || | ||| ||| |||| | Sbjct 742639 GAACCGGAGAAGAAGACACCTTCGATAGCGGCGAAGGCGACCAATCTTTCTGCGTATAGT 742580 Query 39782 GTATCATT-ATGT--ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATT 39838 | ||| || ||| ||||| | ||||| || || | ||| | || || Sbjct 742579 GCATCCTTGCTGTTGATCCAACGAAGAGCCCATAATGCCTTTTCCTTAATTGGGGGAATA 742520 Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898 ||||| || |||||||| | |||| ||| | ||||| | || || || || | Sbjct 742519 GTTTCAATGGCATTAAATAAGTAATCAGATTCCTTCTTATCTGTCACGTAGGTTTCAAGC 742460 Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958 || ||| ||| | || ||||||||||| || | | ||||| |||||||| || Sbjct 742459 AAGAGAGAATAGGTCTCAGAATGGATGTTCTCCACCATGATCTGGAATCCGTAGAAGGCC 742400 Query 39959 CTTGCTTCAGTAATTTGTAC-CTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTAT 40017 || || || | | || || |||| || | ||| |||||| |||| || || Sbjct 742399 CTAGCCTCTGGCAGCTGAACGTTCTGTGTGAAGT-TTTGAATCAAATTCTCATCAACGAT 742341 Query 40018 TCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGT 40077 |||||| |||||||| || ||||| ||| || || |||||| |||||| || | Sbjct 742340 ACCATCAGAGGCGGCAAAGAAGGCCAACACACGTGCGATGAAATATCTTTCATTGGCATT 742281 Query 40078 ---CAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 40134 | || ||||||||| | ||| ||||| | ||| | ||||| || ||||| || Sbjct 742280 AAGCTTGTTCTTCCAGTCAGGAACATCCTTTGAGAGATCGATCTCTTCCGCAGTCCAGAA 742221 Query 40135 CGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAAC 40194 || || || ||||| |||||||| | ||| |||||| ||||| || || || || || Sbjct 742220 AGATGCTTCAGCCTTCTTGTACATCTGCCAAATATCATCGTATTGGATAGGGAACATGAC 742161 Query 40195 AAATCTAT 40202 |||||||| Sbjct 742160 AAATCTAT 742153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908147436640