Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq23 114 1e-20 >seq23 Length=838141 Score = 114 bits (126), Expect = 1e-20 Identities = 558/874 (64%), Gaps = 29/874 (3%) Strand=Plus/Plus Query 43696 TAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACA 43755 ||| |||||| |||| || || ||||| |||| || ||||| |||||||| || || | Sbjct 742154 TAGATTTGTCATGTTCCCTATCCAATACGATGATATTTGGCAGATGTACAAGAAGGCTGA 742213 Query 43756 GGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTG- 43814 || || || ||||| || ||||| | ||| | | || || | | | |||| Sbjct 742214 AGCATCTTTCTGGACTGCGGAAGAGATCGATCTCTCAAAGGATGTTCCTGACTGGAAGAA 742273 Query 43815 CA---TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGA 43871 || |||| ||| | |||| | |||| || | || ||||| || ||||| || Sbjct 742274 CAAGCTTAATGCCA-ATGAAAGATATTTCATCGCACGTGTGTTGGCCTTCTTTGCCGCCT 742332 Query 43872 GCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAG 43931 || || || || |||| |||||| || || | || | ||||| | |||| Sbjct 742333 CTGATGGTATCGTTGATGAGAATTTGATTCAAAACTTCACACAGAACGTTCAGCTGCCAG 742392 Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991 | || | || || || || || || | || || || ||||| || | || Sbjct 742393 AGGCTAGGGCCTTCTACGGATTCCAGATCATGGTGGAGAACATCCATTCTGAGACCTATT 742452 Query 43992 GTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGA 44051 ||| || | || || ||| | | |||| | | || || || |||||||| | Sbjct 742453 CTCTCTTGCTTGAAACCTACGTGACAGATAAGAAGGAATCTGATTACTTATTTAATGCCA 742512 Query 44052 TAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAA 44111 | ||||| | || | ||||| | || ||| ||||| ||| ||||| || | Sbjct 742513 TTGAAACTATTCCCCCAATTAAGGAAAAGGCATTATGGGCTCTTCGTTGGATCAACAGCA 742572 Query 44112 ATGATTCTTTT---GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 | ||| | | | |||| || | ||||| || || | | | ||||| | ||||| | Sbjct 742573 AGGATGCACTATACGCAGAAAGATTGGTCGCCTTCGCCGCTATCGAAGGTGTCTTCTTCT 742632 Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228 | || || ||||||||||| |||||| ||||||| ||||||||||||| || | || | Sbjct 742633 CCGGTTCATTTGCGGCCATCTTTTGGCTAAAGAAGAGAGGTTTGATGCCAGGTCTTACCT 742692 Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTAC 44288 | || || || | || | | || ||||| |||||| |||||| || ||| | ||| Sbjct 742693 TCTCGAACGAACTTATCTGCAGAGACGAAGGTTTACATACCGATTTCGCCTGCCTATTAT 742752 Query 44289 TTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACA---ATTACAGATATTGTTGTAG 44345 | || | || || | ||| | ||||| | || || | || | | Sbjct 742753 TCTCTCATTT--GAAAC----ACCCTCCTAATAAGAAAATCATCACCAAGATCATGACTG 742806 Query 44346 AGGCAGTAAAGATAGAACAAGAATTTAT-GACAACAGCATTACCTGTAAATTTAATAGGA 44404 | || || | || ||| |||| ||| | || | ||||||||||| | | | || Sbjct 742807 AAGCTGTGGATATTGAA-AAGACTTTCTGGAGAGATGCATTACCTGTTTCTCTCTTGGGT 742865 Query 44405 ATGAATGAACTTTTGATGAACCAATATATTGAATACATTG----CAGATCGTTTACTTTT 44460 |||||| | ||||| | |||||| |||| | | || ||||| | ||||| | Sbjct 742866 ATGAATTGTGATATGATGTATCAATATGTTGACTTCTGTGCCGACAGATTG-TTACTCT- 742923 Query 44461 GGAACTGGGTTGCGATAAACACTATATTG-TACAAAACCCGTTTGATTTTATGGAAAATA 44519 || || ||||| ||| ||| | | ||| ||| || || ||||| |||||||| | Sbjct 742924 --CCCTAGGCTGCGACAAAGTCTACAACGCTAC-AAATCCATTCGATTTCATGGAAAACA 742980 Query 44520 TTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAA 44553 | || |||| || || || ||||| || ||||| Sbjct 742981 TCTCATTGGCTGGAAAGACGAACTTCTTCGAAAA 743014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455631856380