Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq12 295 8e-75 seq3 86.0 8e-12 seq23 82.4 1e-10 >seq12 Length=1129233 Score = 295 bits (326), Expect = 8e-75 Identities = 902/1368 (66%), Gaps = 35/1368 (3%) Strand=Plus/Minus Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 |||||||||||||| ||||||| |||||||||| | ||| | || |||||||| || Sbjct 53599 AACTCACCTGCGAGAACTCTTCTCTGGTAGATGTTCGAGGTGAAGGGCTCAAAGCACTCG 53540 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 |||| |||| || || | || || ||||||||||||||||||| ||| || ||| Sbjct 53539 TTATAGCCCATAATCTGGGAAGTAGAAGCTGTTGGCATTGGTGCCACCAAGAGCGAGTTT 53480 Query 110801 CGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTT 110860 | | ||| |||| || ||| | | |||||| || | || | ||| Sbjct 53479 CTCAAACCGTTCTTGGCAATCTTGGACTTCAAAGAATCCCAATCCCAA---AGATCGGTA 53423 Query 110861 T-CACCTTCCCACATG--TCAAACTG-AAGCACCCCTTGGGACGCGGGAGAACCCTCAAA 110916 | ||| || ||| || || || || | ||||||| | || |||||||||||| | Sbjct 53422 GGCTTCTTACCCCATAAATCGAATTGTAATAAGCCCTTGG-ATGCAGGAGAACCCTCATA 53364 Query 110917 GGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATA 110976 | | ||||| | ||| | |||| |||| ||| || ||||| || | ||||| || Sbjct 53363 GCTCTCATATGTACCCTCCTCTTCGGCCAGTTCCGAGGATGCCTCGAGAGCAGCGTGGTA 53304 Query 110977 CATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT--CTGAATCAAATGCGTAG 111034 || || || ||||| || |||| || ||||| ||| ||||| | | || Sbjct 53303 AATAGTCTCGAAGATTTGAATGTTCAACTGACGTGCTTCTGGACTG--TCAAACG-GAAG 53247 Query 111035 CGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCG 111093 ||| | | || || || | |||||| ||||| | | | | ||||||| || Sbjct 53246 GCGCATCTGGAAGAAGGTGTCGGCTAAACCTTGCACACCAACAGCGACTGGTCTGTTACG 53187 Query 111094 CATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTA 111152 ||| ||||| | || || ||| || |||||| | |||||||||||||| ||||| | Sbjct 53186 CATGTTAGAGTAACGTGCC-TCTGGGACAGGATAATAGTTTCTGTCAATGACACGGTTCA 53128 Query 111153 GATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG-TC 111211 || |||| || || | || | ||| | || || | | | |||| || Sbjct 53127 AGTTCCGAGTAAGAACTTTGGCAATCTTATGCAACTTCTCGAAGTTGTACCA-CGAGGTC 53069 Query 111212 TCTTC-----ATT-GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTC 111265 | ||| ||| |||| | || ||| | || ||||| || || ||| | || Sbjct 53068 TTTTCGTCAGATTCGACAAAGGCCGGGAGGCAAAGAGAAGCCAAGTTACAGACACCAGTT 53009 Query 111266 TCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCC 111325 || || ||| |||||| | ||| || |||||||| || ||| || || ||| Sbjct 53008 TCGTCTGGTGCTGAGTACTCGACAATCTCACAGCATAAGTTCGAGGACTTGATGGTACCC 52949 Query 111326 AAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCC 111385 || |||| |||||||||||| |||| || |||||||||||||||||| | || || || Sbjct 52948 AAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAGAGCATGAATGGAGTACCG 52889 Query 111386 GTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGT- 111443 || || ||||| | || | ||| | ||| ||| || | | || | || | ||| Sbjct 52888 GTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCTGAGCCTTG-ACGGT-ACGTC 52831 Query 111444 TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT 111503 | | ||||||||| |||||| ||||| | ||| |||||||| || || | ||| Sbjct 52830 TACCGCGTCCCTCCCTCTCGTAACGCGTGTATAAGGCCTCAAACTCGTCTCCGTACACGT 52771 Query 111504 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCC 111563 | || || || || || | | ||| | || |||| ||||||||| | |||||| | Sbjct 52770 CAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGACCGTTCTGCTCAACAC 52711 Query 111564 GCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCT 111622 |||||||||| | ||| |||||||| |||| || || | ||| | ||| || || Sbjct 52710 GCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATCACGGGCACGGA-TTTCC 52652 Query 111623 TCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCA 111682 || | ||| || || || | |||| ||| || | ||| || ||||||||||| || Sbjct 52651 TCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGTCTGCGTGCCATGGTTCC 52592 Query 111683 AGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGT 111738 | ||| ||||| || | || |||| | || |||| | || || | || || Sbjct 52591 ATATACACTGCAATGGCACCTGGTCTTTTG-TTACCTCCTTGGTCGACGTATCTGGCAGT 52533 Query 111739 GGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT 111798 | ||| || || |||| ||||||||||||||||| ||| ||| || || || || Sbjct 52532 GTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTACCGTTGGTACCGGCGAT 52473 Query 111799 ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGA 111858 ||| | |||| | || | || || ||||| |||||||| || || ||| || Sbjct 52472 GTAAGAGCCAGTGGCACGAACGTTGTGAATATGCATACCAATACCGCCGGCGGTCTTCGA 52413 Query 111859 GATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGC 111918 || |||||||| | | ||| | ||||| || | || || || ||||| | || Sbjct 52412 AATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATAGAATCGTCCTTCATCGC 52353 Query 111919 GATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGT 111978 | | ||||| ||||||||||| ||| ||||| |||||||| | ||||| | Sbjct 52352 AACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCATTGAACAAAGTTGGAGA 52293 Query 111979 TGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 112026 ||||| |||| || | |||||| || || ||||| | ||| Sbjct 52292 AGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTCGATGAC 52245 >seq3 Length=302914 Score = 86.0 bits (94), Expect = 8e-12 Identities = 197/294 (67%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||| | ||| ||||| | || ||| || | |||| ||| || | Sbjct 64020 GCATCAATTTCATCGACGAACACAATCGAAGGAGCATTCTCTCTGGCGGTTTTGAACAAG 63961 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || |||||||| ||||| |||||||||||||| || || || | | | || ||| Sbjct 63960 TCACGAACCCTGGAAGCACCGACACCAACAAACATTTCAACGAACTCCGAACCGGA-CAC 63902 Query 11750 TGGAT-GAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 | || |||||| || | ||| || || | || || | | |||||| || || Sbjct 63901 AGAATAGAATGGAACTGCGGCTTCTCCAGCAGTAGCCTTAGCCAACAAGGTCTTACCGGT 63842 Query 11809 ACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCT 11868 ||| || ||| ||||| || |||| || ||||| ||||| | |||||| Sbjct 63841 ACCAGGAGGACCGCAGAGAATTGCACCTCTTGGAATCTTTGCACCCAAACGCTCATATCT 63782 Query 11869 CTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTC 11922 || || |||||||| || | ||||| ||| || || ||||| ||| |||| Sbjct 63781 TTCCGGATGCTTGAGGAAGTTCACAAACTCCATAATCTCTTCTTTAGCCTCGTC 63728 >seq23 Length=838141 Score = 82.4 bits (90), Expect = 1e-10 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 122676 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTT 122735 ||| || |||| | | |||||||| || |||||| ||||||||||| | ||| | ||| Sbjct 742724 ACCTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGACCTGGCATCAAACCTCTCTT 742665 Query 122736 CTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTC 122783 ||| | |||| | || || ||| ||||| ||||||||||||| ||| || Sbjct 742664 CTTTAGCCAAAAGATGGCCGCA-AATGAACCGGAGAAGAAGACACCTTC 742617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031403369600