Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq12 217 2e-51 >seq12 Length=1129233 Score = 217 bits (240), Expect = 2e-51 Identities = 1151/1809 (64%), Gaps = 43/1809 (2%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || ||||| ||||||| ||||||| | || | ||||| || | ||| || Sbjct 53912 GTAGTACATACCAGTCTTTAGCCCCTTCTTCCAGCCGTAGAAGTGCATCGAAGTCAATTT 53853 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | ||| ||| | | | || |||||| || || ||||||| | || || Sbjct 53852 ACCCATGGTAGGAGCCTGTAAGTGGATGTTCATCGACTGCGACTGATCGAGGTAGGCACC 53793 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 | || || |||||||| || | | |||| || ||||| ||||| | |||||| Sbjct 53792 TCTGTCAGCTGCCATATCGATGATAGCCTTTTGTGGGAGCTCCCAGACAGTACGGTAGAG 53733 Query 118022 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCAT 118081 || || || | |||||| | | | ||| ||||| || || | | | || Sbjct 53732 CTTTTTTATCTTATCTGGAACGTTTGGCAAATTCTGGATCGAACCGTTGTCGTGAATAAT 53673 Query 118082 GAGATCCTTCAT---ATCCTTTGACCAGAGACCAATCTTTTTGAGATC-CTCCACGAGAT 118137 | | |||||| ||| || ||||| ||| || | | || ||| || | | Sbjct 53672 AAAGTTCTTCATGGCATCATT---CCAGATACCCATATCGACAAAGTCTCTCAACATG-T 53617 Query 118138 GCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGT 118197 |||||| | |||||||| ||||| | |||| | ||||| || | ||| Sbjct 53616 AAGGATTGACGATCTGGAACTCACCTGCGAGAACTCTTCTCTGGTAGATGTTCGAGGTGA 53557 Query 118198 ATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 118257 | |||||||||||||| || | |||| || |||| || || ||||| ||||| |||| Sbjct 53556 AGGGCTCAAAGCACTCGTTATAGCCCATAATCTGGGAAGTAGAAGCTGTTGGCATTGGTG 53497 Query 118258 CCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT 118317 ||| | || ||| | | ||| || | ||| ||| | || ||||| | Sbjct 53496 CCACCAAGAGCGAGTTTCTCAAACCGTTCTTGGCAATCTTGGACTTCAAAGAATCCCAAT 53437 Query 118318 CGTAGTTGAGCTTT-GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCT 118376 | | || | | | || | ||| | ||| || || | | || | ||| || Sbjct 53436 CCCAAA-GATCGGTAGGCTTCTTACCCCATAAATCGAATTGTAATAAGCCCTTGGATGCA 53378 Query 118377 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG 118436 || || |||||| | ||||||||| ||||| | || |||| ||| ||| |||||| Sbjct 53377 GGAGAACCCTCATAGCTCTCATATGTACCCTCCTCTTCGGCCAGTTCCGAGGATGCCTCG 53318 Query 118437 AGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT-TGCCTTGGC-CTCGTCGG 118494 || || ||||| || || || || || || || |||| || | || || | | | Sbjct 53317 AGAGCAGCGTGGTAAATAGTCTCGAAGATTTGAATGTTCAACTGACGTGCTTCTGGACTG 53258 Query 118495 AATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 118554 ||||||| || || | | || || || | |||||| ||||| | | | Sbjct 53257 --TCAAACGGAAGGCGCATCTGGAAGAAGGTGTCGGCTAAACCTTGCACACCAACAGCGA 53200 Query 118555 TTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCG 118613 ||| | | | ||| ||||| | || || ||| || |||||| | || || || Sbjct 53199 CTGGTCTGTTACGCATGTTAGAGTAACGTGCC-TCTGGGACAGGATAATAGTTTCTGTCA 53141 Query 118614 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 118673 || || | || | || || | ||| || | || | ||| | ||| ||| | | Sbjct 53140 ATGACACGGTTCAAGTTCCGAGTAAGAACTTTGGCAATCTTATGCAACTTCTCGAAGTTG 53081 Query 118674 AAACTGCGAG-TCTCTTC-----ATT-GACATACTTAGGAAGGGCGATTGACGCCAGATT 118726 | | |||| ||| ||| ||| |||| | || ||| | || |||| || Sbjct 53080 TACCA-CGAGGTCTTTTCGTCAGATTCGACAAAGGCCGGGAGGCAAAGAGAAGCCAAGTT 53022 Query 118727 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACT 118786 ||| ||| || || || | | |||||| | ||| || ||| ||||| || Sbjct 53021 ACAGACACCAGTTTCGTCTGGTGCTGAGTACTCGACAATCTCACAGCATAAGTTCGAGGA 52962 Query 118787 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCAT 118846 ||| ||||| |||||||||| ||| || |||| ||||||| ||||||||||| ||||| Sbjct 52961 CTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCATCCTTGTAGAGCAT 52902 Query 118847 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTG 118905 | |||| || || || || || |||| | | ||| | ||| | | || | || Sbjct 52901 GAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCACAACTTCTGAGCCTT 52842 Query 118906 GCACAGTGGCGT-TGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCT 118964 | || || ||| | | || ||||| |||||| ||||| | ||| |||||||| Sbjct 52841 G-ACGGTA-CGTCTACCGCGTCCCTCCCTCTCGTAACGCGTGTATAAGGCCTCAAACTCG 52784 Query 118965 TCACC---CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGA 119021 || || |||| || || || || || || | ||| | || |||| ||||||| Sbjct 52783 TCTCCGTACACG---TCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATAGAGTCCATTGA 52727 Query 119022 CCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCC 119081 || || |||||| ||||||||||| | ||| || ||||| || || | ||| | ||| Sbjct 52726 CCGTTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTGGGAACAAATCA 52667 Query 119082 CGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 119141 || || ||| || | || ||||| | | || | || || | ||| || Sbjct 52666 CGGGCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAATCGAAGATGTCT 52607 Query 119142 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACCAGCCTGGTT 119197 |||||||| ||||||| ||||| || || | || ||| | ||| | |||| Sbjct 52606 GCGTGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTGTT-ACCTCCTTGGTC 52548 Query 119198 TACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCC 119257 || || || |||||| ||| || ||||||| ||||||||| ||||||| || || Sbjct 52547 GACGTATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCATTTGAGGTACC 52488 Query 119258 ATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATA 119315 || || || ||| || ||| | | |||| | || | ||| || |||||||||||| Sbjct 52487 GTTGGTACCGGCGATGTAAGAGCC--AGTGGCACGAACGTTGTGAATATGCATACCAATA 52430 Query 119316 CCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATC 119375 || || || ||| || || || ||||| | | | | ||||||| || || || Sbjct 52429 CCGCCGGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATGCCTTCAATA 52370 Query 119376 GAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCG 119435 || || |||| | || | | |||||| ||||| || || || ||||| || Sbjct 52369 GAATCGTCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGGGTACCCGCA 52310 Query 119436 TTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCC 119495 ||||| | |||||| | |||||| |||| || | |||||| || |||||||| Sbjct 52309 TTGAACAAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGGACATTAGGTTATAGGTCTCG 52250 Query 119496 AAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGG 119555 | ||| || || || || || ||||| |||| | || | ||||| || | ||| Sbjct 52249 ATGACTCTTGGGATATCGTCACCATGAATTCCGACGGCAACTCTCATAATCAGATGTTGT 52190 Query 119556 GGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGA 119615 ||| | || | |||||| || ||| || || ||||||||| |||| | Sbjct 52189 GGTCTCTCTGCAACTTTACCATTGATTCTCAATAGATAGGAACGCTCCAAGGTTTTGAAA 52130 Query 119616 CCAAAATAG 119624 ||||| ||| Sbjct 52129 CCAAAGTAG 52121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434612486560