Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq12 208 9e-49 seq23 84.2 3e-11 >seq12 Length=1129233 Score = 208 bits (230), Expect = 9e-49 Identities = 1097/1729 (63%), Gaps = 47/1729 (3%) Strand=Plus/Plus Query 104237 ATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGAC 104296 ||| | || ||| |||| |||||||| || || || ||| | ||||| || || Sbjct 52203 ATGAGAGTTGCCGTCGGAATTCATGGTGACGATATCCCAAGAGTCATCGAGACCTATAAC 52262 Query 104297 AAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCA 104356 |||||| | || |||| ||||| | ||||| | |||||||| ||||| ||| Sbjct 52263 CTAATGTCCGAGCGTTATTTCACCCACGCTTCTCCAACTTTGTTCAATGCGGGTACCCCA 52322 Query 104357 AGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATC 104416 || || ||||| ||||| | | || | ||||| || || || | || ||| Sbjct 52323 CATCCGCAGATGTCTTCCTGCTTTTTGGTTGCGATGAAGGACGATTCTATTGAAGGCATC 52382 Query 104417 TATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCAC 104476 || | ||| | | |||||||| || || ||| || || |||||||| ||||| Sbjct 52383 TACGATACTTTGAAAGAGTGTGCCTTGATTTCGAAGACCGCCGGCGGTATTGGTATGCAT 52442 Query 104477 ATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGT 104536 || || | || | |||| | ||| || || || || ||| ||| ||||| Sbjct 52443 ATTCACAACGTTCGTGCCACTGGCTCTTACATCGCCGGTACCAACGGTACCTCAAATGGT 52502 Query 104537 ATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT 104596 |||||||||||| |||| || || ||| ||| || | || || | |||| || Sbjct 52503 ATTATTCCAATGATTCGTGTTTTCAACAACACTGCCAGATACGTCGACCAAG-GAGGTAA 52561 Query 104597 CGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTT 104652 | |||| || | || ||||| ||| | || ||||||||||| || ||| | || || Sbjct 52562 CAAAAGACCAGGTGCCATTGCAGTGTATATGGAACCATGGCACGCAGACATCTTCGATTT 52621 Query 104653 CCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGC 104712 | |||| | | || || ||| | ||||| || ||| ||| | ||| | || Sbjct 52622 CATTGATATCAGAAAGAATCATGGTAAGGAGGAAATCCGTGCCCGTGATTTGTTCCCAGC 52681 Query 104713 TCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTT 104772 || |||||||| || | ||||||||| | |||||| ||| || | ||| |||| || Sbjct 52682 CCTATGGATTCCCGACTTGTTCATGAAGCGTGTTGAGCAGAACGGTCAATGGACTCTATT 52741 Query 104773 TTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG---GGTGAGGAGTTTGAAGCCCT 104829 || ||| | | || || || || || || |||| || || |||||||| ||| | Sbjct 52742 TTCGCCATCCGAAGCTCCGGGCCTTTC---TGACGTGTACGGAGACGAGTTTGAGGCCTT 52798 Query 104830 TTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TGT 104888 ||||| |||||| || || || | | || || | || | || | ||| Sbjct 52799 ATACACGCGTTACGAGAGGGAGGGACGCGGTAGACGTACCGT-CAAGGCTCAGAAGTTGT 52857 Query 104889 GGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACG 104948 || | ||| | | | || || || || ||||| |||| |||||| ||||| || | Sbjct 52858 GGTACCAGATTTTGGAAGCCCAGACTGAAACCGGTACTCCATTCATGCTCTACAAGGATG 52917 Query 104949 CCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTA 105008 | |||||| ||||||||| ||| |||| |||||| |||||| || || | || Sbjct 52918 CATGTAACAGAAAGAGTAACCAACAGAACTTGGGTACCATCAAGTCCTCGAACTTATGCT 52977 Query 105009 CAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCG 105068 || || | || | ||| ||| || || | ||| |||||| | || || | Sbjct 52978 GTGAGATTGTCGAGTACTCAGCACCAGACGAAACTGGTGTCTGTAACTTGGCTTCTCTTT 53037 Query 105069 CTCTCCCCAAGTATGTGGATCCAGAGACAAAGACAT-TTG-----ATTATGAAAAACTCC 105122 ||||| | ||| || | || |||||| | || | | || || | | Sbjct 53038 GCCTCCCGGCCTTTGTCGAATCTGACGAAAAGACCTCGTGGTACAACTTCGAGAAGTTGC 53097 Query 105123 ACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACC 105182 | | || | ||| | | || ||| | ||| | || ||||| ||||| | ||| | Sbjct 53098 ATAAGATTGCCAAAGTTCTTACTCGGAACTTGAACCGTGTCATTGACAGAAACTATTATC 53157 Query 105183 CCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAG 105241 | || ||| || ||| | ||||| ||| | || | ||| | | | | ||||| || Sbjct 53158 CTGTCCCAGA-GGCACGTTACTCTAACATGCGTAACAGACCAGTCGCTGTTGGTGTGCAA 53216 Query 105242 GGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG--ATTCCGACGAAGCGAAGG 105299 ||| | || || ||| | | |||| | |||| | ||| ||||| Sbjct 53217 GGTTTAGCCGACACCTTCTTCCAGATGCGCCTTCCGTTTGACAGTCC--AGAAGCACGTC 53274 Query 105300 AAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGT 105359 | | || | || || ||||| || || ||||| ||||| ||||| || || Sbjct 53275 AGTTGAACATTCAAATCTTCGAGACTATTTACCACGCTGCTCTCGAGGCATCCTCGGAAC 53334 Query 105360 TGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGC 105419 |||| || | || ||| ||||||| | || |||||||||||| || || |||||| | Sbjct 53335 TGGCCGAAGAGGAGGGTACATATGAGAGCTATGAGGGTTCTCCTGCATC-CAAGGGCTTA 53393 Query 105420 TT-CAATTTGATATGTGGGAAGGTGAGA--CCAAGC-TTCACTACGACTGGGAAGCTCTC 105475 || ||||| ||| | ||| ||| ||| || | | || | || ||||| || | Sbjct 53394 TTACAATTCGATTTATGG---GGTAAGAAGCCTACCGATCTTTGGGATTGGGATTCTTTG 53450 Query 105476 AAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACA 105535 ||| || |||| ||| | | ||| ||| | |||| |||||||||||| Sbjct 53451 AAGTCCAAGATTGCCAAGAACGGTTTGAGAAACTCGCTCTTGGTGGCACCAATGCCAACA 53510 Query 105536 GCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATC 105595 || || || | || || |||| |||| || |||||||| |||| ||| |||||||| Sbjct 53511 GCTTCTACTTCCCAGATTATGGGCTATAACGAGTGCTTTGAGCCCTTCACCTCGAACATC 53570 Query 105596 TATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA--CAAGCATCTCGTGGATG 105653 || | ||||||| ||||| || ||||| ||| ||||| | ||| | || | Sbjct 53571 TACCAGAGAAGAGTTCTCGCAGGTGAGTTCCAGATCGTCAATCCTTACATGT--TGAGAG 53628 Query 105654 ACCTCAAAGAGATTGGTCTCTGGTCCAAGGAT---ATGAAGGATCTCATGGTGAAAGCGG 105710 || | || || ||| ||||| || ||| |||||| | | || | | | Sbjct 53629 ACTTTGTCGATATGGGTATCTGG---AATGATGCCATGAAGAACTTTATTATTCACGACA 53685 Query 105711 GTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAG 105770 ||||| || || ||| | | ||||| || | || || ||| | ||||| || | Sbjct 53686 ACGGTTCGATCCAGAATTTGCCAAACGTTCCAGATAAGATAAAAAAGCTCTACCGTACTG 53745 Query 105771 TTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTG 105830 | ||||| || |||| | |||| || ||||| || || | ||| || | | | Sbjct 53746 TCTGGGAGCTCCCACAAAAGGCTATCATCGATATGGCAGCTGACAGAGGTGCCTACCTCG 53805 Query 105831 ATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTC 105888 ||| |||| ||| ||||| || | | | ||| || ||| || | |||| Sbjct 53806 ATC--AGTCGCAGTCGATGAACATCCACTTACAGGCTCCTACCATGGGTAAATTGACTTC 53863 Query 105889 TATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 |||||| | ||| | ||||||||||| || || || || ||||| ||| Sbjct 53864 GATGCACTTCTACGGCTGGAAGAAGGGGCTAAAGACTGGTATGTACTAC 53912 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/231 (68%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 104512 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 104571 ||| || ||||| ||||| ||| ||| | || ||||| || || || ||| || || Sbjct 997990 GGGTACCAATGGAGAATCAAGTGGAATTGTGCCTATGCTGCGAGTCTTCAACAGTACCGC 997931 Query 104572 GCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCC 104628 | ||||| | || | ||| | ||| || ||||| | |||||| || || Sbjct 997930 TCAATATGTTGACCAGGGTGGTAATAAACGACCTGGTGCTATCTGTGCCTATCTAGAACC 997871 Query 104629 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGC 104688 ||||| |||||||||||||| ||| | || ||| ||||| ||| | || ||| Sbjct 997870 GTGGCATGCGGATATCATGGAATTCTTAGACTTGAAAAAGAACCACGGTAAGGAAGAGAT 997811 Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAA 104739 | || | | || || |||| ||||| ||||| |||||| | |||||||| Sbjct 997810 GAGGGCCAGGGACCTATTCTATGCTCTTTGGATCCCAGATTTGTTCATGAA 997760 >seq23 Length=838141 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 94831 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCT 94889 || ||| |||||||||| ||||| || |||| | || | |||||| |||||| ||||| | Sbjct 742617 GAAGGTGTCTTCTTCTCCGGTTCATT-TGCGGCCATCTTTTGGCTAAAGAAGAGAGGTTT 742675 Query 94890 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||||||||||| |||||| ||||| ||||||| | ||||| || Sbjct 742676 GATGCCAGGTCTTACCTTCTCGAACGAACTTATCTGCAGAGACGAAGG 742723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260245902240