Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq12 215 6e-51 >seq12 Length=1129233 Score = 215 bits (238), Expect = 6e-51 Identities = 1106/1737 (64%), Gaps = 59/1737 (3%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || ||||| |||||||| || ||||| || ||||||||||| ||||| | |||||| Sbjct 53920 GTACGCAAGTAGTACATACCAGTCTTTAGCCCCTTCTTCCAGCCGTAGAAGTGCATCGAA 53861 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | || || ||| | || || | | |||||| | |||||| ||||| |||| | Sbjct 53860 GTCAATTTACCCATGGTAGGAGCCTGTAAGTGGATGTTCATCGACTGCGACTGATCGAGG 53801 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 || ||||| | ||| || ||||| ||||||| | |||||| || | |||||||| || Sbjct 53800 TAGGCACCTCTGTCAGCTGCCATATCGATGATAGCCTTTTGTGGGAGCTCCCAGACAGTA 53741 Query 78370 CGGTAAATGGCCTTCAGCTCTTC-CTGGAT-GTCCAGCGCTTGTACGCTCCCACCGGC-T 78426 ||||| | || || |||| ||||| || || | | || |||| | Sbjct 53740 CGGTAGA--GCTTTTTTATCTTATCTGGAACGTTTGGCAAATTCTGGATCGAACCGTTGT 53683 Query 78427 CGC--ACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGGA 78484 || | ||| ||||| || | |||||| | || | || || | | Sbjct 53682 CGTGAATAATAAAGTTCTTCATGGCATCATTCCAGATACCCATATCGACAAAGTCTCTCA 53623 Query 78485 CCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGG 78544 || || | || | || |||||| || || || | | | |||||||||| | Sbjct 53622 ACATGTAAGGATTGACGATCTGGAACTCACCTGCGAGAACTCTTCTCTGGTAGATGTTCG 53563 Query 78545 TCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGC 78603 ||| | ||||| ||||| |||||| | ||||| ||||||| || || || || ||| Sbjct 53562 AGGTGAAGGGCTC-AAAGCACTCGTTATAGCCCATAATCTGGGAAGTAGAAGCTGTTGGC 53504 Query 78604 ATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTG---ATCTCGACCTTTAGG 78660 || ||||| |||| || || || | | ||| | ||||| |||| | ||| | Sbjct 53503 ATTGGTGCCACCAAGAGCGAGTTTCTCAAACCGT---TCTTGGCAATCTTGGACTTCAAA 53447 Query 78661 ------CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCC 78714 | ||||||| || | | | | ||||| | || ||| | | ||| Sbjct 53446 GAATCCCAATCCCAAAGATCGGTAGGCTTCTTACCCCATAAATCGAATTGTAATAAGCCC 53387 Query 78715 TCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTC---G 78771 | ||| || || || |||| | |||| || | |||||||| | ||| ||||| | Sbjct 53386 TTGGATGCAGGAGAACCCTCATAGCTCTCATATGTACCCTCCTCTTCGGCCAGTTCCGAG 53327 Query 78772 CATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGC 78831 ||| |||||| || |||||||| | || ||||||||| |||| | || || Sbjct 53326 GATGCCTCGAGA---GCAGCGTGGTAAATAGTCTCGAAGATTTGAATGTTCAACTGACGT 53270 Query 78832 GCCT-TGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACA---TCGGCCAGGCCCTG 78887 || | ||| || ||| |||| ||||| ||||| ||||| ||||| | || || Sbjct 53269 GCTTCTGGACT-GTCAAACGGAAGGC---GCATCTGGAAGAAGGTGTCGGCTAAACCTTG 53214 Query 78888 GACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGG-T 78946 || || | ||||| |||| || |||||||| | || ||| | | || | || | Sbjct 53213 CACACCAACAGCGACTGGTCTGTTACGCATGTTAGAGTAACGTGCCTC-TGGGACAGGAT 53155 Query 78947 AAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACA 79006 || |||| | || ||||| ||||||| ||| || || | || | | || | || Sbjct 53154 AATAGTTTCTGTCAATGACACGGTTCAAGTTCCGAGTAAGAACTTTGGCAATCTTATGCA 53095 Query 79007 ATTTGGCGAAATCAAA--ATGATTTCCTTT----------GATGAAAGTCGGTAGGCACA 79054 | || |||| | | | || || ||| || || | ||| ||||| | Sbjct 53094 ACTTCTCGAAGTTGTACCACGAGGTCTTTTCGTCAGATTCGACAAAGGCCGGGAGGCAAA 53035 Query 79055 GCGATGCCAGGTTGCACACGGCCGTCTCGTCCGG-GCTAGAAACCTCGATGATTTCTGTG 79113 | || |||| ||| || || | || ||||| || ||| || ||||| || || | Sbjct 53034 GAGAAGCCAAGTTACAGACACCAGTTTCGTCTGGTGCT-GAGTACTCGACAATCTCACAG 52976 Query 79114 CACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCG 79173 || || || || ||||||||||| || | ||||| ||||| ||||| |||||| || Sbjct 52975 CATAAGTTCGAGGACTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCTGTTACATGCA 52916 Query 79174 TCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAG 79233 ||||||||| |||| | || || ||||| ||| ||| | | || || ||| Sbjct 52915 TCCTTGTAGAGCATGAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAATCTGGTACCAC 52856 Query 79234 ATGTCCCGGGCCCGGACAACCTTCTTGTACCGA--CCCTGTGCGACGTACGTCCGGTACA 79291 | | | | ||| ||| | | | ||||| |||| |||| | ||| | Sbjct 52855 AACTTCTGAGCCTTGACGG--TACGTCTACCGCGTCCCTCCCTCTCGTAACGCGTGTATA 52798 Query 79292 ACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCA 79351 | | | || | || || || || || | |||||||| ||| || | | | Sbjct 52797 AGGCCTCAAACTCGTCTCCGTACACGTCAGAAAGGCCCGGAGCTTCGGATGGCGAAAATA 52738 Query 79352 GGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCG 79411 | ||| | ||| || |||||| || |||||| | ||| || ||||| ||||| | Sbjct 52737 GAGTCCATTGACCGTTCTGCTCAACACGCTTCATGAACAAGTCGGGAATCCATAGGGCTG 52678 Query 79412 TGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGT 79471 ||| | || ||| ||| || ||||| | || || ||| | | || | || | Sbjct 52677 GGAACAAATCACGGGCACGGATTTCCTCCTTACCATGATTCTTTCTGATATCAATGAAAT 52618 Query 79472 CCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGC 79531 | | |||||| |||||||| || |||| ||| | || | | ||| | ||| | Sbjct 52617 CGAAGATGTCTGCGTGCCATGGTTCCATATACACTGCAATGGCACCTGGTCTTTTGTTAC 52558 Query 79532 CGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGT 79591 | || |||| |||||| | ||| |||||||||||||| || | ||| || | || || | Sbjct 52557 CTCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCAT 52498 Query 79592 CGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTC-GAGCAGTGG 79650 | | ||||| || ||| ||| | || | || |||| ||| || | || Sbjct 52497 TTGAGGTACCGTTGGTACCGGCGATGTAAGAGCCAGTGGCACGAACGTTGTGAATA-TGC 52439 Query 79651 ATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATG 79710 || || || || |||| ||| || || || ||||| || | || ||||||||| Sbjct 52438 ATACCAATACCGCCGGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAGTATCGTAGATG 52379 Query 79711 CCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTC 79770 || || || || ||||||||||| || |||| |||||| |||||||| || | Sbjct 52378 CCTTCAATAGAATCGTCCTTCATCGCAACCAAAAAGCAGGAAGACATCTGCGGATGTGGG 52319 Query 79771 GTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTG-AAGAACTTTTGGCTCATCAGATC 79829 ||||| || ||||| | || || | ||||| ||| || ||| | || ||| || | Sbjct 52318 GTACCCGCATTGAACAAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGG-ACATTAGGTT 52260 Query 79830 GTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 79886 || ||||| |||| | |||| ||||| || || || ||||| || || | ||| Sbjct 52259 ATAGGTCTCGATGACTCTTGGGATATCGTCACCATGAATTCCGACGGCAACTCTCAT 52203 Score = 176 bits (194), Expect = 5e-39 Identities = 1091/1736 (63%), Gaps = 53/1736 (3%) Strand=Plus/Plus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||| |||| || ||||| || ||||| ||||| |||| ||||| |||||| || || Sbjct 52203 ATGAGAGTTGCCGTCGGAATTCATGGTGACGATATCCCAAGAGTCATCGAGACCTATAAC 52262 Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237 || ||| | || | ||||| ||||| | || || | ||||| || ||||| Sbjct 52263 CTAATGTCCGAGCGTTATTTCACCCACGCTTCTCCAACTTTGTTCAATGCGGGTACCCCA 52322 Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297 | ||||||||||| ||| || | || || |||||||| || ||||| |||||| Sbjct 52323 CATCCGCAGATGTCTTCCTGCTTTTTGGTTGCGATGAAGGACGATTCTATTGAAGGCATC 52382 Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357 ||||| || | || ||||| || || || ||| |||| ||||| || || || Sbjct 52383 TACGATACTTTGAAAGAGTGTGCCTTGATTTCGAAGACCGCCGGCGGTATTGGTATGCA- 52441 Query 19358 TGCTC-GAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGG 19416 | || || | || | | ||| | ||| || || ||||| | | || Sbjct 52442 TATTCACAACGTTCGTGCCACTGGCTCTTACATCGCCGGTACCAACGGTACCTCAAATGG 52501 Query 19417 TATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGG 19476 ||| | |||||| | || || ||||||||||| ||||| |||||| |||| || || Sbjct 52502 TATTATTCCAATGATTCGTGTTTTCAACAACACTGCCAGATACGTCGACCAAGGAGGTAA 52561 Query 19477 CAAACG-CAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATT 19535 |||| | | ||| | || || | || | || ||||||||||| ||| || | |||| Sbjct 52562 CAAAAGACCAGGTGCCATT-GCAGTGTATATGGAACCATGGCACGCAGACATCTTCGATT 52620 Query 19536 TCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGG 19595 || | || | | ||| || ||| | ||||| || || || || | ||| | | Sbjct 52621 TCATTGATATCAGAAAGAATCATGGTAAGGAGGAAATCCGTGCCCGTGATTTGTTCCCAG 52680 Query 19596 CCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGA 19655 || | |||||||| ||| | |||||| || |||||| || ||| ||||| || Sbjct 52681 CCCTATGGATTCCCGACTTGTTCATGAAGCGTGTTGAGCAGAACGGTCAATGGACTCTAT 52740 Query 19656 TGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGT 19715 | | || |||| || ||||| | ||||| ||||| || | ||| | | || | Sbjct 52741 TTTCGCCATCCGAAGCTCCGGGCCTTTCTGACGTGTACGGAGACGAGTTTGAGGCCTTAT 52800 Query 19716 ACCGGACTTACGTAGCCCAGGGCCG-GTTCAAGAAG-GTGGTCCGGGCCCGGGACGTCTG 19773 || | ||||| |||| || | | ||| | ||| ||| | | | | || Sbjct 52801 ACACGCGTTACGAGAGGGAGGGACGCGGT--AGACGTACCGTCAAGGCTCAGAAGTTGTG 52858 Query 19774 GGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGC 19833 | ||| | | || |||| || ||||| || || | |||| ||||||||| || Sbjct 52859 GTACCAGATTTTGGAAGCCCAGACTGAAACCGGTACTCCATTCATGCTCTACAAGGATGC 52918 Query 19834 CGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTAC 19893 ||| ||| || || ||||| | || | |||||||| || ||| | || Sbjct 52919 ATGTAACAGAAAGAGTAACCAACAGAACTTGGGTACCATCAAGTCCTCGAACTTATGCTG 52978 Query 19894 TGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTG 19953 ||| || | ||| || || ||||| |||| || ||||| |||| || || || Sbjct 52979 TGAGATTGTCGAGTACTCAGCACCAGACGAAACTGGTGTCTGTAACTTGGCTTCTCTTTG 53038 Query 19954 CCTGCCGACTTTCGTC------------AAGGCCTCCTCCTTCGACTTTGCCAAATTGTA 20001 ||| ||| | || ||| ||| |||| | | | |||| | || ||| | Sbjct 53039 CCTCCCGGCCTTTGTCGAATCTGACGAAAAGACCTCGTGGTACAACTTCGAGAAGTTGCA 53098 Query 20002 CGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTA-CC 20060 || | || || | || || || |||| || ||||| || | |||| ||| || Sbjct 53099 TAAGATTGCCAAAGTTCTTACTCGGAACTTGAACCGTGTCATTGACAGAAACTATTATCC 53158 Query 20061 CGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGG 20120 | || | | ||| || | || || ||||| || | || |||| | || || || | Sbjct 53159 TGTCCCA-GAGGCACGTTACTCTAACATGCGTAACAGACCAGTCGCTGTTGGTGTGCAAG 53217 Query 20121 GCCTGGCCGA---CGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCG 20177 | | ||||| | | ||| ||||| |||| | || ||| ||| | || || Sbjct 53218 GTTTAGCCGACACCTTCTTCCAGATGC---GCCTTCCGTTTGACAGTCCAGAAGCACGTC 53274 Query 20178 AGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAAC 20237 || | |||| ||||||||| | | |||||||| || ||| || ||| | |||| Sbjct 53275 AGTTGAACATTCAAATCTTCGAGACTATTTACCACGCTGCTCTCGAGGCATCCTCGGAAC 53334 Query 20238 TCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCC 20297 | ||| ||||||| || | || |||| | |||| || || || ||| |||| | Sbjct 53335 TGGCCGAAGAGGAGGGTACATATGAGAGCTATGAGGGTTCTCCTGCATCCAAGGGCTTAT 53394 Query 20298 TCCAGCCGGACATGTGGGG-----CGTC-ACTGAGAATGAGTTTTGGAGCGCCCTCAAGG 20351 | || || | ||||| | | || || | | |||| | | ||| Sbjct 53395 TACAATTCGATTTATGGGGTAAGAAGCCTACCGATCTTTGGGATTGGGATTCTTTGAAGT 53454 Query 20352 TTGAGAT---CAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCG 20408 |||| ||||| |||| | | |||||| | | || || || ||||| || | Sbjct 53455 CCAAGATTGCCAAGA---ACGGTTTGAGAAACTCGCTCTTGGTGGCACCAATGCCAACAG 53511 Query 20409 CCTCGACCGCCCAGATCATGGGGAACAACGAG-GCTTTCGAGCCGTACACGACCAACATC 20467 | || || ||||||| ||||| | |||||| ||||| ||||| | ||| | |||||| Sbjct 53512 CTTCTACTTCCCAGATTATGGGCTATAACGAGTGCTTT-GAGCCCTTCACCTCGAACATC 53570 Query 20468 TACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGAC 20527 ||| | | | || || ||||||||| || || || || || | | ||| Sbjct 53571 TACCAGAGAAGAGTTCTCGCAGGTGAGTTCCAGATCGTCAATCCTTACATGTTGAGAGAC 53630 Query 20528 TTGCAGAAGATCGATATGTG----GTCGCCCAAAATTAAGAATGAAATTGTCCGAGCCGG 20583 || | || | ||| || | ||| || ||||| ||| | | | | Sbjct 53631 TTTGTCGATATGGGTATCTGGAATGATGCC----ATGAAGAACTTTATTATTCACGACAA 53686 Query 20584 CGGGAGCGTCCAGGCATTG---GATATCCCCCAGAACCTCAAGGACATTTACAGGACCGT 20640 ||| ||||| ||| | | || | || | || | | ||| | || || Sbjct 53687 CGGTTCGATCCAGAATTTGCCAAACGTTCCAGATAAGATAAAAAAGCTCTACCGTACTGT 53746 Query 20641 ATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGA 20700 ||||| ||||||| ||| |||||||| ||||| || || | || |||||| |||| Sbjct 53747 CTGGGAGCTCCCACAAAAGGCTATCATCGATATGGCAGCTGACAGAGGTGCCTACCTCGA 53806 Query 20701 CCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCAT 20760 ||||| |||||| | || || | | || ||| | | ||| || ||| || || Sbjct 53807 TCAGTCGCAGTCGATGAACATCCACTTACAGGCTCCTACCATGGGTAAATTGACTTCGAT 53866 Query 20761 GCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACCC 20816 ||| | ||||||||| | |||||||| ||||| || |||||||| |||| |||| Sbjct 53867 GCACTTCTACGGCTGGAAGAAGGGGCTAAAGACTGGTATGTACTACTTGCGTACCC 53922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524278901440