Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq12 152 6e-32 >seq12 Length=1129233 Score = 152 bits (168), Expect = 6e-32 Identities = 353/527 (67%), Gaps = 4/527 (1%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACG 53233 |||| || || |||| | ||| | || ||| | || || || |||||||| | | Sbjct 52182 GAGAGACCACAACATCTGATTATGAGAGTTGCCGTCGGAATTCATGGTGACGATATCCCA 52241 Query 53234 CGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACC 53293 | ||| ||||| || || ||||| | | || || || ||||| | ||||| Sbjct 52242 AGAGTCATCGAGACCTATAACCTAATGTCCGAGCGTTATTTCACCCACGCTTCTCCAACT 52301 Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 ||||||| || ||||| || || |||||||| |||||| |||| ||||||||| Sbjct 52302 TTGTTCAATGCGGGTACCCCACATCCGCAGATGTCTTCCTGCTTTTTGGTTGCGATGAAG 52361 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 || || || || || ||||||||||| || | || ||||||||| || || ||| Sbjct 52362 GACGATTCTATTGAAGGCATCTACGATACTTTGAAAGAGTGTGCCTTGATTTCGAAGACC 52421 Query 53414 TCGGGTGGTATCGGTATCCACTGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGG 53472 | || ||||| ||||| || | || ||||| ||||| | ||| | ||| || Sbjct 52422 GCCGGCGGTATTGGTATGCA-TATTCACAACGTTCGTGCCACTGGCTCTTACATCGCCGG 52480 Query 53473 GACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532 || ||||| | | |||| || | || ||| | || || ||||||||||| ||| | Sbjct 52481 TACCAACGGTACCTCAAATGGTATTATTCCAATGATTCGTGTTTTCAACAACACTGCCAG 52540 Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 |||||| |||| || ||| || | | ||| | | || || | || | || || | Sbjct 52541 ATACGTCGACCAAGGAGGTAACAAAAGACCAGGTGCCATT-GCAGTGTATATGGAACCAT 52599 Query 53592 GGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651 ||||||| ||||| | || || | || | | |||||| ||| | || || || | Sbjct 52600 GGCACGCAGACATCTTCGATTTCATTGATATCAGAAAGAATCATGGTAAGGAGGAAATCC 52659 Query 53652 GCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 | |||||| |||| |||| || |||||||| ||| | |||||| Sbjct 52660 GTGCCCGTGATTTGTTCCCAGCCCTATGGATTCCCGACTTGTTCATG 52706 Score = 125 bits (138), Expect = 8e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 55739 TACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGT 55798 ||||| || || |||||| | ||||| ||| | | || || ||| ||||| | ||| Sbjct 53736 TACCGTACTGTCTGGGAGCTCCCACAAAAGGCTATCATCGATATGGCAGCTGACAGAGGT 53795 Query 55799 GCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAG 55858 || ||| |||| ||||| ||||| |||||||| | | || |||| | ||| || Sbjct 53796 GCCTACCTCGATCAGTCGCAGTCGATGAACATCCACTTACAGGCTCCTACCATGGGTAAA 53855 Query 55859 TTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTG 55918 |||| ||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || Sbjct 53856 TTGACTTCGATGCACTTCTACGGCTGGAAGAAGGGGCTAAAGACTGGTATGTACTACTTG 53915 Query 55919 CGGACCC 55925 || |||| Sbjct 53916 CGTACCC 53922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215480144800