Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq12 168 8e-37 seq1 136 5e-27 seq45 118 1e-21 >seq12 Length=1129233 Score = 168 bits (186), Expect = 8e-37 Identities = 1098/1752 (63%), Gaps = 67/1752 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || |||| |||||||| || ||||| || ||||||||||||||||| | |||| Sbjct 53926 GCCTGGGTACGCAAGTAGTACATACCAGTCTTTAGCCCCTTCTTCCAGCCGTAGAAGTGC 53867 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| | | || | | || || || | | |||||||| ||||| |||||| Sbjct 53866 ATCGAAGTCAATTTACCCATGGTAGGAGCCTGTAAGTGGATGTTCATCGACTGCGACTGA 53807 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 || | | || || | || || ||||| || || || | ||||||||| | ||||| Sbjct 53806 TCGAGGTAGGCACCTCTGTCAGCTGCCATATCGATGATAGCCTTTTGTGGGAGCTCCCAG 53747 Query 80212 ACTGTACGATACACCTTACGAAGCTCCTCTGGAATGTC---CAGATTTTGCACACTGCCA 80268 || ||||| || | ||| | || ||||||| || || ||| || | || Sbjct 53746 ACAGTACGGTAGAGCTTTTTTATCTTATCTGGAACGTTTGGCAAATTCTGGATCGAACCG 53687 Query 80269 CCGTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCT 80328 ||| | | ||| || |||| || |||||| ||| | | | | ||| Sbjct 53686 TTGTCGTGAATAATAAAGTTCTTCATGGCATCATTCCAGATACCCATATCGACAAAGTCT 53627 Query 80329 TTCACAAGGT---GCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATAC 80385 ||| | || | ||| ||| || |||| || ||||| | | | | || Sbjct 53626 CTCAACATGTAAGGATTGACGATCTGGA---ACTCACCTGCGAGAACTCTTCTCTGGTAG 53570 Query 80386 AGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCC 80445 | ||| | ||| | |||||||| |||||| | || | ||||| | || || Sbjct 53569 ATGTTCGAGGTGAAGGGCTCAAAGCACTCGTTATAGCCCATAATCTGGGAAGTAGAAGCT 53510 Query 80446 GTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGC 80505 || ||||| || | ||||| || || || | || |||| ||||| || Sbjct 53509 GTTGGCATTGGTGCCACCAAGAGCGAGTTTCTCAAACCGT---TCTTG----------GC 53463 Query 80506 AAATCT--GAC--CAAA-AATC--AACCCCAACGCTGTG----------ACCCCACATGT 80548 || ||| ||| |||| |||| || ||||| | | | |||||| | | Sbjct 53462 AA-TCTTGGACTTCAAAGAATCCCAATCCCAAAGATCGGTAGGCTTCTTACCCCATAAAT 53404 Query 80549 CGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCG 80608 || || || | ||||| || || ||||| ||| | | |||| || | |||||| Sbjct 53403 CGAATTGTAATAAGCCCTTGGATGCAGGAGAACCCTCATAGCTCTCATATGTACCCTCC- 53345 Query 80609 TCTT-GGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCC 80667 |||| |||||| || | || || || || ||||| ||||| ||| |||| Sbjct 53344 TCTTCGGCCAGTTCCGAGGATGCCTCGAGAGCAGCGTGGTAAATAGTCTCGAAGATTTGA 53285 Query 80668 TTGTTCACACCG-CGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTC 80726 |||||| || | || || | ||| ||| |||| | || |||| | ||| ||| Sbjct 53284 ATGTTCA-ACTGACGTGCTTCTGGACTGTCAAACGGAAGGCGCATCTGGAAGAAGGTGTC 53226 Query 80727 AGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTC 80786 || | || || || || | |||| || | || ||| |||| || ||||| Sbjct 53225 GGCTAAACCTTGCACACCAACAGCGACTGGTCTGTTACGCATGTTAGAGTAACGTGCCTC 53166 Query 80787 CGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGT 80846 || | || ||| |||| | || ||||| ||||||| ||| || |||| ||| | Sbjct 53165 TGGGACAGGATAATAGTTTCTGTCAATGACACGGTTCAAGTTCCGAGTAAGAACTTTGGC 53106 Query 80847 AACATCATGAAGTTTCTGAAAGTCGAATT----GGT-------TCCCCTTC-ACAAATGC 80894 || | ||| | |||| |||| | | ||| || ||| ||||| || Sbjct 53105 AATCTTATGCAACTTCTCGAAGTTGTACCACGAGGTCTTTTCGTCAGATTCGACAAAGGC 53046 Query 80895 CGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGAC 80954 ||| |||| || || |||| || || || | || || | ||| ||||||| Sbjct 53045 CGGGAGGCAAAGAGAAGCCAAGTTACAGACACCAGTTTCGTCTGGTGCTGAGTACTCGAC 52986 Query 80955 GATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGC 81014 || || ||| || || || ||||| || ||||||| ||| | ||||| ||| Sbjct 52985 AATCTCACAGCATAAGTTCGAGGACTTGATGGTACCCAAGTTCTGTTGGTTACTCTTTCT 52926 Query 81015 GTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGAT 81074 ||| || || ||||||||| |||| | || |||||||| || ||| | | | || Sbjct 52925 GTTACATGCATCCTTGTAGAGCATGAATGGAGTACCGGTTTCAGTCTGGGCTTCCAAAAT 52866 Query 81075 GGCGTCCCAAATCTCGCGCGCCTTGACC--ACCT-TGCGGAATTTGCCTTCGGCCACATA 81131 || ||| | || | |||||||| || | | | | | || || | | || Sbjct 52865 CTGGTACCACAACTTCTGAGCCTTGACGGTACGTCTACCGCGT---CCCTCCCTCTCGTA 52809 Query 81132 CTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTT 81191 | ||| | || |||| | | |||| | |||| ||| | || ||| Sbjct 52808 ACGCGTGTATAAGGCCTCAAACTCGTCTCCGTACACGTCAGAAAGGCCCGGAGCTTCGGA 52749 Query 81192 AGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGAT 81251 || | | || ||| | || | ||| ||| ||||||||| ||| || || Sbjct 52748 TGGCGAAAATAGAGTCCATTGACCGTTCTGCTCAACACGCTTCATGAACAAGTCGGGAAT 52689 Query 81252 CCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAA 81311 ||| ||||| | ||||| || ||| || ||||| | ||| || || | | Sbjct 52688 CCATAGGGCTGGGAACAAATCACGGGCACGGATTTCCTCCTTACCATGATTCTTTCTGAT 52629 Query 81312 CTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC--- 81368 || | || || | |||||| || |||||||| |||| |||||| || || | || Sbjct 52628 ATCAATGAAATCGAAGATGTCTGCGTGCCATGGTTCCATATACACTGCAATGGCACCTGG 52569 Query 81369 -CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAG 81427 ||| | || || |||| |||||| | |||||| ||| || ||||| | ||| | Sbjct 52568 TCTTTTGTTA-CCTCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAAACACGAATCATTG 52510 Query 81428 GGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCT 81487 | || ||||||| ||| |||||| ||||| |||| || || |||| || || | Sbjct 52509 GAATAATACCATTTGAGGTACCGTTGGTACCGGCGATGTAAGAGCCAGTGGCACGAACGT 52450 Query 81488 TGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGG 81547 || || | ||| || || || | ||| |||||| |||||| |||| | Sbjct 52449 TGTGAATATGCATACCAATACCGCCGGCGGTCTTCGAAATCAAGGCACACTCTTTCAAAG 52390 Query 81548 TCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCT 81607 | || || || || || || ||| | ||||| ||| ||| || ||| ||||||| Sbjct 52389 TATCGTAGATGCCTTCAATAGAATCGTCCTTCATCGCAACCAAAAAGCAGGAAGACATCT 52330 Query 81608 GAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTG 81667 | || | | || |||||||||| ||||| | ||||| |||||||||| | | Sbjct 52329 GCGGATGTGGGGTACCCGCATTGAACAAAGTTGGAGAAGCGTGGGTGAAATAACGCTCGG 52270 Query 81668 ACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTA 81727 |||| |||| |||||| || |||| | ||| ||||||||||| ||||| |||| || | Sbjct 52269 ACATTAGGTTATAGGTCTCGATGACTCTTGGGATATCGTCACCATGAATTCCGACGGCAA 52210 Query 81728 CACGCATAAACA 81739 | | ||||| || Sbjct 52209 CTCTCATAATCA 52198 >seq1 Length=1746572 Score = 136 bits (150), Expect = 5e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | ||||| ||||| ||||| | ||||||||||| | Sbjct 814058 ATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATTACCTTGGAGGTTGAGTCTTCT 813999 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| || || || ||||||||||||||||| || || ||| Sbjct 813998 GACACTATTGACAATGTCAAGCAGAAGATCCAAGACAAGGAGGGAATTCCACCTGATCAG 813939 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||||||||| | ||||||| | || | ||||||| || Sbjct 813938 CAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACATTGTCAGACTACAAC 813879 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| ||||||||||| | || |||||||| Sbjct 813878 ATCCAGAAGGAATCCACCTTGCACTTAGTCTTG 813846 >seq45 Length=579175 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| | || || ||||| ||||| | || || ||||| Sbjct 355110 AATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACCATTACCTTGGAAGTCGAGTCTTC 355051 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| | ||| || ||||| || ||||||||||| || ||||| || Sbjct 355050 TGATACCATTGACAATGTCAAGCAGAAGATTCAAGATAAGGAGGGAATCCCACCAGATCA 354991 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||||||||||||| | ||||| | | || | | ||||| || Sbjct 354990 GCAGAGATTGATCTTTGCTGGTAAGCAATTGGAGGACGGCAGAACTTTGTCCGACTACAA 354931 Query 27585 TGTCCAAAAGGAATCCAC 27602 | ||||||||||| || Sbjct 354930 CATTCAAAAGGAATCAAC 354913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309858205120