Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq15 113 3e-20
seq1 96.9 2e-15
seq45 84.2 1e-11
>seq15
Length=115448
Score = 113 bits (124), Expect = 3e-20
Identities = 155/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553
||| ||||| || ||||| |||||| || || || || || |||||||||| | ||
Sbjct 457 CAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATC 398
Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613
||| | || ||||||||||| || || | ||| || || || || | || || || ||
Sbjct 397 TTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATC 338
Query 34614 TGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCG 34672
| ||||||||| ||| ||| || || |||||| || ||||||| ||| || |
Sbjct 337 TTGGATCTTTTG-TTTCACGTTATCGATCGTGTCTGAAGATTCGACTTCCAAGGTGATGG 279
Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || ||||| || || || |||||||||||
Sbjct 278 TTTTGCCTGTTAATGTCTTGACGAAAATCTGCAT 245
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | | ||| ||||| || ||||| |||||| || || || || || |||
Sbjct 243 CCACCTCTCAATCTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAA 184
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||||| | ||||| | || ||||||||||| || || | ||| || || || ||
Sbjct 183 AGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGA 124
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTCTTCGCTCTCCAC 34658
| || || || ||| |||||||||||| | | || || || || ||| ||
Sbjct 123 ATACCTTCTTTATCTTGGATCTTTTGTTTCACATTAT-CGATCGTATCAGAAGACTCGAC 65
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| ||| || || ||||| || || || || || |||||||||||
Sbjct 64 TTCCAAGGTGATGGTCTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17
>seq1
Length=1746572
Score = 96.9 bits (106), Expect = 2e-15
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | | ||| || || || | ||| ||||| || ||||| || |||||
Sbjct 813832 CCACCTCTCAATCTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGAC 813891
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| ||||| | || || | || ||||| ||||| || || | ||| || || || ||
Sbjct 813892 AATGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGA 813951
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659
| ||||||||||||| |||||| || || | ||| ||||| ||| ||
Sbjct 813952 ATTCCCTCCTTGTCTTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGACTCAACC 814011
Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712
|||| ||| || || |||||||| || || || || ||||| ||||| |||||
Sbjct 814012 TCCAAGGTAATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATATTGAT 814064
>seq45
Length=579175
Score = 84.2 bits (92), Expect = 1e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575
|||||||||||||| || || || | |||| |||| || | ||| ||||| |||||
Sbjct 354919 TCCTTTTGAATGTTGTAGTCGGACAAAGTTCTGCCGTCCTCCAATTGCTTACCAGCAAAG 354978
Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635
|| || | ||| || || || || | ||||||||| ||| ||||| || || |
Sbjct 354979 ATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTTATCTTGAATCTTCTGCTTGACATTG 355038
Query 34636 AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695
||| || || ||| ||||||| ||| || || ||||| || || || || ||
Sbjct 355039 TCAATGGTATCAGAAGACTCGACTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACG 355098
Query 34696 AAAATCTGCATGTT 34709
||||| ||||| ||
Sbjct 355099 AAAATTTGCATTTT 355112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729308481708
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |