Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq15 113 3e-20 seq1 96.9 2e-15 seq45 84.2 1e-11 >seq15 Length=115448 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 ||| ||||| || ||||| |||||| || || || || || |||||||||| | || Sbjct 457 CAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATC 398 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||| | || ||||||||||| || || | ||| || || || || | || || || || Sbjct 397 TTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATC 338 Query 34614 TGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCG 34672 | ||||||||| ||| ||| || || |||||| || ||||||| ||| || | Sbjct 337 TTGGATCTTTTG-TTTCACGTTATCGATCGTGTCTGAAGATTCGACTTCCAAGGTGATGG 279 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || ||||| || || || ||||||||||| Sbjct 278 TTTTGCCTGTTAATGTCTTGACGAAAATCTGCAT 245 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| ||||| || ||||| |||||| || || || || || ||| Sbjct 243 CCACCTCTCAATCTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAA 184 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | || ||||||||||| || || | ||| || || || || Sbjct 183 AGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGA 124 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| |||||||||||| | | || || || || ||| || Sbjct 123 ATACCTTCTTTATCTTGGATCTTTTGTTTCACATTAT-CGATCGTATCAGAAGACTCGAC 65 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || ||||| || || || || || ||||||||||| Sbjct 64 TTCCAAGGTGATGGTCTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17 >seq1 Length=1746572 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || || || | ||| ||||| || ||||| || ||||| Sbjct 813832 CCACCTCTCAATCTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGAC 813891 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | || || | || ||||| ||||| || || | ||| || || || || Sbjct 813892 AATGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGA 813951 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||||||||||| |||||| || || | ||| ||||| ||| || Sbjct 813952 ATTCCCTCCTTGTCTTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGACTCAACC 814011 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 |||| ||| || || |||||||| || || || || ||||| ||||| ||||| Sbjct 814012 TCCAAGGTAATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATATTGAT 814064 >seq45 Length=579175 Score = 84.2 bits (92), Expect = 1e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||||||||| || || || | |||| |||| || | ||| ||||| ||||| Sbjct 354919 TCCTTTTGAATGTTGTAGTCGGACAAAGTTCTGCCGTCCTCCAATTGCTTACCAGCAAAG 354978 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | ||| || || || || | ||||||||| ||| ||||| || || | Sbjct 354979 ATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTTATCTTGAATCTTCTGCTTGACATTG 355038 Query 34636 AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695 ||| || || ||| ||||||| ||| || || ||||| || || || || || Sbjct 355039 TCAATGGTATCAGAAGACTCGACTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACG 355098 Query 34696 AAAATCTGCATGTT 34709 ||||| ||||| || Sbjct 355099 AAAATTTGCATTTT 355112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729308481708