Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq15 145 2e-29 seq1 87.8 4e-12 >seq15 Length=115448 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||||||||| ||||| || ||||| || || || | ||| || || |||||||| Sbjct 454 GACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATCTTC 395 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 | |||||| || || ||||| | | || || |||||||||| ||||| || || || Sbjct 394 TAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATCTTG 335 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||||||||||||||| ||||| ||||| || ||| || || | ||||| || || Sbjct 334 GATCTTTTGTTTCACGTTATCGATCGTGTCTGAAGATTCGACTTCCAAGGTGATGGTTTT 275 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | ||||| || || | |||||| Sbjct 274 GCCTGTTAATGTCTTGACGAAAATCTGCAT 245 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||| ||||| || ||||| || || || | ||| || || |||||||| | ||| Sbjct 220 GTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATCTTCTAACTG 161 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | | || || |||||||||| ||||| || || |||||||| Sbjct 160 CTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATCTTGGATCTT 101 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||||||| || ||||| || ||||| || || || | ||||| ||||| || || Sbjct 100 TTGTTTCACATTATCGATCGTATCAGAAGACTCGACTTCCAAGGTGATGGTCTTACCAGT 41 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | |||||| Sbjct 40 CAATGTCTTGACGAAAATCTGCAT 17 >seq1 Length=1746572 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 |||||||||||||| || ||||| || |||||||| | ||||||| ||| | || | Sbjct 1004407 CTTCCAAAGAAGCATGGTAGAGGTGGTCAATCTGCCGTTCGTTTTGCCAGATTGAGAGAT 1004348 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAA 139926 |||||||| || |||||| | || || ||||| ||| ||| | ||| || || | | Sbjct 1004347 GAAAAGAGACATAACTACATCAGGAAGGTTGCCGAGGTTGCAGTTCAGAACTTCATTACA 1004288 Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGAC 139982 || | ||| | ||| ||| | | ||||| ||||| || || |||||||| Sbjct 1004287 AACGATAAGGTTAACGTTGTCGGTTTGATCTTGGCTGGTTCTGCCGATTTCAAGAC 1004232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150871275740