Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq45 113 3e-20 seq15 93.3 3e-14 seq1 91.5 1e-13 >seq45 Length=579175 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| ||||||||||| ||| | ||||| || || || || | ||||| || || Sbjct 355112 AAAATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACCATTACCTTGGAAGTCGAGTCT 355053 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||| | | || || || ||| || || || || | || |||||| Sbjct 355052 TCTGATACCATTGACAATGTCAAGCAGAAGATTCAAGATAAGGAGGGAATCCCACCAGAT 354993 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | || || ||||| || || ||| |||| |||| | ||||| ||| ||| Sbjct 354992 CAGCAGAGATTGATCTTTGCTGGTAAGCAATTGGAGGACGGCAGAACTTTGTCCGACTAC 354933 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||| || || ||||| || || ||| | || ||| |||| || Sbjct 354932 AACATTCAAAAGGAATCAACATTGCACTTGGTTCTCAGATTGAGAGGTGG 354883 >seq15 Length=115448 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| ||||| | ||||| || || | Sbjct 245 ATGCAGATTTTCGTCAAGACATTAACAGGCAAAACCATCACCTTGGAAGTCGAATCTTCA 304 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | |||||||| || || ||||||||| | || || ||||| Sbjct 305 GACACGATCGATAACGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAG 364 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATTACA 23788 ||| | || || |||||||| || || | ||||| | | |||||| || |||| Sbjct 365 CAGAGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTT--CTGACTACA 422 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | || || || ||||| || | || || || || |||||| | || || Sbjct 423 ATATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGAGGTTGAGGGGTGG 471 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || || || ||||| | ||||| || || | Sbjct 17 ATGCAGATTTTCGTCAAGACATTGACTGGTAAGACCATCACCTTGGAAGTCGAGTCTTCT 76 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | |||||||| || || ||||||||| | || || ||||| Sbjct 77 GATACGATCGATAATGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAG 136 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATTACA 23788 ||| | || || |||||||| || || | ||||| | | |||||| || |||| Sbjct 137 CAGAGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTT--CTGACTACA 194 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | || || || ||||| || | || || ||||| || ||| |||| || Sbjct 195 ATATCCAGAAGGAGTCTACTCTTCACTTGGTTTTGAGATTGAGAGGTGG 243 >seq1 Length=1746572 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||||||||| ||| | || || || || || || | || ||||| || Sbjct 814061 AATATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATTACCTTGGAGGTTGAGTCT 814002 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||| | | || || || || ||||| || || | || || ||| Sbjct 814001 TCTGACACTATTGACAATGTCAAGCAGAAGATCCAAGACAAGGAGGGAATTCCACCTGAT 813942 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | || || ||||| || || || |||| || | | || || || ||| Sbjct 813941 CAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACATTGTCAGACTAC 813882 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || || || ||||| || || ||||| || || ||| |||| || Sbjct 813881 AACATCCAGAAGGAATCCACCTTGCACTTAGTCTTGAGATTGAGAGGTGG 813832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009286918608