Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq15 149 1e-30 seq1 143 6e-29 >seq15 Length=115448 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 |||| ||| | ||| ||||| || || || |||| |||||| || | | ||||| ||| Sbjct 459 CTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCA 400 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 ||||||| |||||| || || ||||| | || || || || || ||||||||||| || Sbjct 399 TCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTA 340 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 |||||||||||||| ||||| ||||| |||||||| | ||| || || || ||||| Sbjct 339 TCTTGGATCTTTTGTTTCACGTTATCGATCGTGTCTGAAGATTCGACTTCCAAGGTGATG 280 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || || || | ||| | ||||| Sbjct 279 GTTTTGCCTGTTAATGTCTTGACGAAAATCTGCAT 245 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| ||||| || || || |||| |||||| || | | ||||| || Sbjct 232 TCTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACC 173 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| |||||| || || ||||| | || || || || || ||||||||||| || Sbjct 172 ATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTT 113 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||||| |||||| ||||| || || || | || || || || ||||| Sbjct 112 ATCTTGGATCTTTTGTTTCACATTATCGATCGTATCAGAAGACTCGACTTCCAAGGTGAT 53 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| || || | ||| | ||||| Sbjct 52 GGTCTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17 >seq1 Length=1746572 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | |||||||| || |||| ||||| || | ||| ||||| || Sbjct 813843 TCTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGACAATGTTCTGCC 813902 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| || | |||||| ||||| ||||| | || || || || || ||||| || ||||| Sbjct 813903 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGAATTCCCTCCTT 813962 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||||| ||| || || ||||| || | || || || || || || Sbjct 813963 GTCTTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGACTCAACCTCCAAGGTAAT 814022 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || ||||| || || | ||| | |||||| || Sbjct 814023 GGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATATT 814061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530038772744