Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq15 149 1e-30
seq1 143 6e-29
>seq15
Length=115448
Score = 149 bits (164), Expect = 1e-30
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558
|||| ||| | ||| ||||| || || || |||| |||||| || | | ||||| |||
Sbjct 459 CTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCA 400
Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618
||||||| |||||| || || ||||| | || || || || || ||||||||||| ||
Sbjct 399 TCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTA 340
Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678
|||||||||||||| ||||| ||||| |||||||| | ||| || || || |||||
Sbjct 339 TCTTGGATCTTTTGTTTCACGTTATCGATCGTGTCTGAAGATTCGACTTCCAAGGTGATG 280
Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| || || || || | ||| | |||||
Sbjct 279 GTTTTGCCTGTTAATGTCTTGACGAAAATCTGCAT 245
Score = 141 bits (156), Expect = 2e-28
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| ||||| || || || |||| |||||| || | | ||||| ||
Sbjct 232 TCTCAAAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACC 173
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||||| |||||| || || ||||| | || || || || || ||||||||||| ||
Sbjct 172 ATCTTCTAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTT 113
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||||| |||||| ||||| || || || | || || || || |||||
Sbjct 112 ATCTTGGATCTTTTGTTTCACATTATCGATCGTATCAGAAGACTCGACTTCCAAGGTGAT 53
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || ||||| || || | ||| | |||||
Sbjct 52 GGTCTTACCAGTCAATGTCTTGACGAAAATCTGCAT 17
>seq1
Length=1746572
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| ||| | ||| | |||||||| || |||| ||||| || | ||| ||||| ||
Sbjct 813843 TCTCAAGACTAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGACAATGTTCTGCC 813902
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||| || | |||||| ||||| ||||| | || || || || || ||||| || |||||
Sbjct 813903 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGAATTCCCTCCTT 813962
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||| ||||| ||| || || ||||| || | || || || || || ||
Sbjct 813963 GTCTTGGATCTTCTGCTTGACATTGTCAATAGTGTCAGAAGACTCAACCTCCAAGGTAAT 814022
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || ||||| || || | ||| | |||||| ||
Sbjct 814023 GGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATATT 814061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530038772744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |