Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq23 187 2e-42 >seq23 Length=838141 Score = 187 bits (206), Expect = 2e-42 Identities = 587/895 (66%), Gaps = 31/895 (3%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || ||||| ||||| || | |||||||||||| || || || || | || || || ||| Sbjct 743035 TTCTGGTAATCGGAAACCCTCTTTTCGAAGAAGTTCGTCTTTCCAGCCAATGAGATGTTT 742976 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| ||||| || ||||| || |||||||| ||| || || ||| | | | | Sbjct 742975 TCCATGAAATCGAATGGATTTGTAGCGTTGTAGACTTTGTCGCAGCCTAGGGAGAGTAAC 742916 Query 4377 AATCGGTCAGCTACA-AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 |||| ||| || ||| || || | ||| || ||| | || || || || || | | Sbjct 742915 AATCTGTCGGC-ACAGAAGTCAACATATTGATACATCATATCACAATTCATACCCAAGAG 742857 Query 4436 TCTCACAGGTAGCGCGTATGTCAA-AAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 ||||||| || | | || | ||| |||| ||| ||| || ||||| || || | Sbjct 742856 AGAAACAGGTAATGCATCTCTCCAGAAAGTCTT-TTCAATATCCACAGCTTCAGTCATGA 742798 Query 4495 TATCTT-----TTATTTTATCTTTAG-ATGGTTTATTTACTAAGTATCCAAACAATAAAC 4548 | ||| | ||||| | |||| | ||| | | | | || || |||| | Sbjct 742797 T--CTTGGTGATGATTTTCTTATTAGGAGGGTGTTTCAAATGAGAG----AATAATAGGC 742744 Query 4549 ACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATC 4608 | || ||||| ||| |||||||||||||||| || |||||||| || || || | | Sbjct 742743 AGGCGAAATCGGTATGTAAACCTTCGTCTCTGCAGATAAGTTCGTTCGAGAAGGTAAGAC 742684 Query 4609 CGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATA 4668 | ||||| ||||||||||| || |||||||| || || |||||||| || || ||||| | Sbjct 742683 CTGGCATCAAACCTCTCTTCTTTAGCCAAAAGATGGCCGCAAATGAACCGGAGAAGAAGA 742624 Query 4669 TGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCG-AACGAGCTGGCTTTGTCTTTA 4727 ||||| | ||||| || || || |||| || | | || | ||| || Sbjct 742623 CACCTTCGATAGCGGCGAAGGCGACCAATCTTTCTGCGTATAGTGC-ATCCTTGCTGTTG 742565 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 ||||| | ||||| || |||| ||||| ||||| || | || || ||| Sbjct 742564 ATCCAACGAAGAGCCCATAATGCCTTTTCCTTAATTGGGGGAATAGTTTCAATGGCATTA 742505 Query 4788 AATAATTTA----CTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 ||||| | | || ||| || ||| | || || || | | || ||| Sbjct 742504 AATAAGTAATCAGATTCCTTCTTATCTGTC----ACGTAGGTTTCAAGCAAGAGAGAATA 742449 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 | |||||||| || || || | ||||| |||||||| ||| ||||| |||| Sbjct 742448 GGTCTCAGAATGGATGTTCTCCACCATGATCTGGAATCCGTAGAAGGCCCTAGCCTCTGG 742389 Query 4904 TACTTGAAC-TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 | ||||| ||| | || | ||| | || || || | || ||||| ||| || Sbjct 742388 CAGCTGAACGTTCTGTGTGAAGT-TTTGAATCAAATTCTCATCAACGATACCATCAGAGG 742330 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAG---TTTTT 5019 | ||||| || ||||| ||| | | || || || ||| | | ||||| || | Sbjct 742329 CGGCAAAGAAGGCCAACACACGTGCGATGAAATATCTTTCATTGGCATTAAGCTTGTTCT 742270 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG 5079 |||||| || | ||| || | | ||| | ||||| ||||||| || || ||||| | Sbjct 742269 TCCAGTCAGGAACATCCTTTGAGAGATCGATCTCTTCCGCAGTCCAGAAAGATGCTTCAG 742210 Query 5080 CTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 | || |||||||| |||||||||| || || || || | ||||||||||| Sbjct 742209 CCTTCTTGTACATCTGCCAAATATCATCGTATTGGATAGGGAACATGACAAATCT 742155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049204445308