Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq15 120 7e-22 seq1 86.0 1e-11 >seq15 Length=115448 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||||||||| || ||||| ||||| || | | ||||| |||||||||| Sbjct 451 CAAG-TGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATCTTCTA 393 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||| ||||| | |||||||| || | | || ||||| || ||||| | Sbjct 392 ACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATCTTGGA 333 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | |||||||| || | || | |||||||| || ||||| | || || ||||||| Sbjct 332 TCTTTTGTTTCACGTTATCGATCGTGTCTGAAGATTCGACTTCCAAGGTGATGGTTTTGC 273 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||| | |||||| Sbjct 272 CTGTTAATGTCTTGACGAAAATCTGCAT 245 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||||||||| || ||||| ||||| || | | ||||| |||||||||| Sbjct 223 CAAG-TGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATCTTCTA 165 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||| ||||| | |||||||| || | | || ||||| || ||||| | Sbjct 164 ACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATCTTGGA 105 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | |||||||| ||| | || | | || ||| ||| ||||| | || || || || | Sbjct 104 TCTTTTGTTTCACATTATCGATCGTATCAGAAGACTCGACTTCCAAGGTGATGGTCTTAC 45 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||| | |||||| Sbjct 44 CAGTCAATGTCTTGACGAAAATCTGCAT 17 >seq1 Length=1746572 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || || || ||||||||||| || | || ||||| ||||| || | || || Sbjct 813862 GTGGATTCCTTCTGGATGTTGTAGTCTGACAATGTTCTGCCATCCTCCAACTGCTTACCA 813921 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | |||||||| || | | ||||| ||||| ||||| || || || ||| Sbjct 813922 GCAAAGATCAATCTCTGCTGATCAGGTGGAATTCCCTCCTTGTCTTGGATCTTCTGCTTG 813981 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | |||| ||| ||| || || | ||||| || || || || | ||| Sbjct 813982 ACATTGTCAATAGTGTCAGAAGACTCAACCTCCAAGGTAATGGTCTTACCGGTCAAGGTC 814041 Query 152088 TTCACGAAGACCTGCATTTT 152107 || ||||| | ||||| || Sbjct 814042 TTAACGAAAATTTGCATATT 814061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819676466996