Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq15 156 9e-33 seq1 143 6e-29 seq45 134 3e-26 seq21 104 5e-17 >seq15 Length=115448 Score = 156 bits (172), Expect = 9e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| |||||||||| ||| || | ||||| |||| || || ||||||||| Sbjct 207 TCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAG 148 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || || ||| |||||||| || || |||||||||||| ||| || || Sbjct 147 ATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATCTTGGATCTTTTGTTTCACATTA 88 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || || |||| |||||||| | ||||| |||||||| ||||| ||||| ||| Sbjct 87 TCGATCGTATCAGAAGACTCGACTTCCAAGGTGATGGTCTTACCAGTCAATGTCTTGACG 28 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 27 AAAATCTGCAT 17 Score = 156 bits (172), Expect = 9e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| |||||||||| ||| || | ||||| |||| || || ||||||||| Sbjct 435 TCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAG 376 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || || ||| |||||||| || || |||||||||||| ||| ||| || Sbjct 375 ATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATCTTGGATCTTTTGTTTCACGTTA 316 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| |||| ||||||||| | ||||| || || || || || ||||| ||| Sbjct 315 TCGATCGTGTCTGAAGATTCGACTTCCAAGGTGATGGTTTTGCCTGTTAATGTCTTGACG 256 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 255 AAAATCTGCAT 245 >seq1 Length=1746572 Score = 143 bits (158), Expect = 6e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 || || ||| ||| || |||||||||||||| | | || | ||||||||| | || Sbjct 813856 TGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGACAATGTTCTGCCATCCTCCAACTGC 813915 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT- 283015 || || ||||||||||| | || || ||| ||||| |||||||||||||||||||| Sbjct 813916 TTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGAATTCCCTCCTTGTCTTGGATCTTC 813975 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||| || || | || |||||||| |||| || || || | || || |||||||| || Sbjct 813976 TGC-TTGACATTGTCAATAGTGTCAGAAGACTCAACCTCCAAGGTAATGGTCTTACCGGT 814034 Query 283076 CAAAGTCTTAACGAATATCTGCATTTTCATA 283106 ||| ||||||||||| || ||||| || ||| Sbjct 814035 CAAGGTCTTAACGAAAATTTGCATATTGATA 814065 >seq45 Length=579175 Score = 134 bits (148), Expect = 3e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | || |||| || || || ||| ||||| ||||||||||| | Sbjct 354882 ACCACCTCTCAATCTGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCGGA 354941 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || | ||| ||||| | ||| || || ||||||||||| | || || || || Sbjct 354942 CAAAGTTCTGCCGTCCTCCAATTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGG 355001 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || |||||||| ||||| ||||| ||| || || | || || || || |||| |||| Sbjct 355002 GATTCCCTCCTTATCTTGAATCTTCTGC-TTGACATTGTCAATGGTATCAGAAGACTCGA 355060 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 |||| | || || |||||||||||||| ||||||||||| || ||||||||| Sbjct 355061 CTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTTC 355113 >seq21 Length=87012 Score = 104 bits (114), Expect = 5e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 316990 TCATGCTCAACATATGCAGTTTTCAGAATATCCTTCG-TCGGGAACCCTTCCAACTGACC 317048 || ||||||||||| ||||| | | | | ||| | | ||||| || || | ||| || Sbjct 50732 TCGTGCTCAACATAGACAGTTCTGC-ACTCTTCTTGGGTTGGGAAGCCCTCAACCTGGCC 50674 Query 317049 GTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATA 317108 || | | ||| ||| || || ||||| |||||||| || || || |||||||| || Sbjct 50673 ATTAGCCAAGGCCTTCAGAAGAGTGGACTTACCAGCACCGTTAGGACCACAAAGACCGTA 50614 Query 317109 CCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGC 317168 | | || |||||| | || |||| ||||||| |||||| || ||||||| || Sbjct 50613 TCTTCTACCTCTCTTCAAACGAAGCTGGGTCTTGTTCAAAAGAATTCTAGCACCATAAGC 50554 Query 317169 CAGAGAGAACTCACAATCACACAGGTCCTCGCCG 317202 || |||||||||||| | ||| | ||| || ||| Sbjct 50553 CAAAGAGAACTCACAGTTACATAAGTCTTCACCG 50520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738180737704