Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq15 156 9e-33
seq1 143 6e-29
seq45 134 3e-26
seq21 104 5e-17
>seq15
Length=115448
Score = 156 bits (172), Expect = 9e-33
Identities = 149/191 (78%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || ||||| |||||||||| ||| || | ||||| |||| || || |||||||||
Sbjct 207 TCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAG 148
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| | || || ||| |||||||| || || |||||||||||| ||| || ||
Sbjct 147 ATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATCTTGGATCTTTTGTTTCACATTA 88
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
||||| || || |||| |||||||| | ||||| |||||||| ||||| ||||| |||
Sbjct 87 TCGATCGTATCAGAAGACTCGACTTCCAAGGTGATGGTCTTACCAGTCAATGTCTTGACG 28
Query 283089 AATATCTGCAT 283099
|| ||||||||
Sbjct 27 AAAATCTGCAT 17
Score = 156 bits (172), Expect = 9e-33
Identities = 149/191 (78%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || ||||| |||||||||| ||| || | ||||| |||| || || |||||||||
Sbjct 435 TCCTTCTGGATATTGTAGTCAGAAAGTGTTCTACCATCTTCTAACTGCTTACCGGCAAAG 376
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| | || || ||| |||||||| || || |||||||||||| ||| ||| ||
Sbjct 375 ATCAATCTCTGCTGATCAGGAGGAATACCTTCTTTATCTTGGATCTTTTGTTTCACGTTA 316
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
||||| ||||| |||| ||||||||| | ||||| || || || || || ||||| |||
Sbjct 315 TCGATCGTGTCTGAAGATTCGACTTCCAAGGTGATGGTTTTGCCTGTTAATGTCTTGACG 256
Query 283089 AATATCTGCAT 283099
|| ||||||||
Sbjct 255 AAAATCTGCAT 245
>seq1
Length=1746572
Score = 143 bits (158), Expect = 6e-29
Identities = 160/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956
|| || ||| ||| || |||||||||||||| | | || | ||||||||| | ||
Sbjct 813856 TGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGACAATGTTCTGCCATCCTCCAACTGC 813915
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT- 283015
|| || ||||||||||| | || || ||| ||||| ||||||||||||||||||||
Sbjct 813916 TTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGAATTCCCTCCTTGTCTTGGATCTTC 813975
Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
||| || || | || |||||||| |||| || || || | || || |||||||| ||
Sbjct 813976 TGC-TTGACATTGTCAATAGTGTCAGAAGACTCAACCTCCAAGGTAATGGTCTTACCGGT 814034
Query 283076 CAAAGTCTTAACGAATATCTGCATTTTCATA 283106
||| ||||||||||| || ||||| || |||
Sbjct 814035 CAAGGTCTTAACGAAAATTTGCATATTGATA 814065
>seq45
Length=579175
Score = 134 bits (148), Expect = 3e-26
Identities = 171/233 (73%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| | || | || |||| || || || ||| ||||| ||||||||||| |
Sbjct 354882 ACCACCTCTCAATCTGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCGGA 354941
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| || | ||| ||||| | ||| || || ||||||||||| | || || || ||
Sbjct 354942 CAAAGTTCTGCCGTCCTCCAATTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGG 355001
Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|| |||||||| ||||| ||||| ||| || || | || || || || |||| ||||
Sbjct 355002 GATTCCCTCCTTATCTTGAATCTTCTGC-TTGACATTGTCAATGGTATCAGAAGACTCGA 355060
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103
|||| | || || |||||||||||||| ||||||||||| || |||||||||
Sbjct 355061 CTTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTTC 355113
>seq21
Length=87012
Score = 104 bits (114), Expect = 5e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 316990 TCATGCTCAACATATGCAGTTTTCAGAATATCCTTCG-TCGGGAACCCTTCCAACTGACC 317048
|| ||||||||||| ||||| | | | | ||| | | ||||| || || | ||| ||
Sbjct 50732 TCGTGCTCAACATAGACAGTTCTGC-ACTCTTCTTGGGTTGGGAAGCCCTCAACCTGGCC 50674
Query 317049 GTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATA 317108
|| | | ||| ||| || || ||||| |||||||| || || || |||||||| ||
Sbjct 50673 ATTAGCCAAGGCCTTCAGAAGAGTGGACTTACCAGCACCGTTAGGACCACAAAGACCGTA 50614
Query 317109 CCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGC 317168
| | || |||||| | || |||| ||||||| |||||| || ||||||| ||
Sbjct 50613 TCTTCTACCTCTCTTCAAACGAAGCTGGGTCTTGTTCAAAAGAATTCTAGCACCATAAGC 50554
Query 317169 CAGAGAGAACTCACAATCACACAGGTCCTCGCCG 317202
|| |||||||||||| | ||| | ||| || |||
Sbjct 50553 CAAAGAGAACTCACAGTTACATAAGTCTTCACCG 50520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738180737704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |