Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016-
10-07] 76 sequences; 11,283,072 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq15 143 6e-29
seq45 113 1e-19
seq1 107 5e-18
>seq15
Length=115448
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || | ||||| ||||| |||||| | || || ||| ||||||
Sbjct 248 CAGATTTTCGTCAAGACATTAACAGGCAAAACCATCACCTTGGAAGTCGAATCTTCAGAC 307
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| ||||||||||| || || |||||||| || ||||| || |||||
Sbjct 308 ACGATCGATAACGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAGCAG 367
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| ||||| || ||| | |||||||| || || ||| | || || || ||
Sbjct 368 AGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAATATC 427
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135
|| || || || || || || | || |||||
Sbjct 428 CAGAAGGAGTCTACTCTTCACTTGGTCTTGAG 459
Score = 125 bits (138), Expect = 2e-23
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || | || || || || |||||| | || || || || ||
Sbjct 20 CAGATTTTCGTCAAGACATTGACTGGTAAGACCATCACCTTGGAAGTCGAGTCTTCTGAT 79
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || ||||||||||| || || |||||||| || ||||| || |||||
Sbjct 80 ACGATCGATAATGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAGCAG 139
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| ||||| || ||| | |||||||| || || ||| | || || || ||
Sbjct 140 AGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAATATC 199
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || || || || || | ||||||||| | |||
Sbjct 200 CAGAAGGAGTCTACTCTTCACTTGGTTTTGAGATTGAGA 238
>seq45
Length=579175
Score = 113 bits (124), Expect = 1e-19
Identities = 162/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| |||||||||| || || | || || || || || ||| | || || ||
Sbjct 355112 AAAATGC---AAATTTTCGTTAAGACCTTGACGGGTAAGACCATTACCTTGGAAGTCGAG 355056
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| || ||||| || || ||||| || |||||||| || || || |||||||| ||
Sbjct 355055 TCTTCTGATACCATTGACAATGTCAAGCAGAAGATTCAAGATAAGGAGGGAATCCCACCA 354996
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| ||||| || | ||||| || || || || | || || || || ||| | ||||
Sbjct 354995 GATCAGCAGAGATTGATCTTTGCTGGTAAGCAATTGGAGGACGGCAGAACTTTGTCCGAC 354936
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| ||| | ||||| ||||||||| |||| | ||| | ||| | |||
Sbjct 354935 TACAACATTCAAAAGGAATCAACATTGCACTTGGTTCTCAGATTGAGA 354888
>seq1
Length=1746572
Score = 107 bits (118), Expect = 5e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || | || || || || || ||| | ||||| || || |||
Sbjct 814055 CAAATTTTCGTTAAGACCTTGACCGGTAAGACCATTACCTTGGAGGTTGAGTCTTCTGAC 813996
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || ||||| || ||||| || ||||| || ||||| || || || |||||
Sbjct 813995 ACTATTGACAATGTCAAGCAGAAGATCCAAGACAAGGAGGGAATTCCACCTGATCAGCAG 813936
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || || || ||| | || ||||| || || | | || || ||| ||
Sbjct 813935 AGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACATTGTCAGACTACAACATC 813876
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || ||||| || |||| | || |||||| | |||
Sbjct 813875 CAGAAGGAATCCACCTTGCACTTAGTCTTGAGATTGAGA 813837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730027866744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |