Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20naardenensis_20[genbank_20GCA_5F001753995.1_202016- 10-07] 76 sequences; 11,283,072 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq15 143 6e-29 seq45 113 1e-19 seq1 107 5e-18 >seq15 Length=115448 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | ||||| ||||| |||||| | || || ||| |||||| Sbjct 248 CAGATTTTCGTCAAGACATTAACAGGCAAAACCATCACCTTGGAAGTCGAATCTTCAGAC 307 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||||||||||| || || |||||||| || ||||| || ||||| Sbjct 308 ACGATCGATAACGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAGCAG 367 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || ||| | |||||||| || || ||| | || || || || Sbjct 368 AGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAATATC 427 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 || || || || || || || | || ||||| Sbjct 428 CAGAAGGAGTCTACTCTTCACTTGGTCTTGAG 459 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | || || || || |||||| | || || || || || Sbjct 20 CAGATTTTCGTCAAGACATTGACTGGTAAGACCATCACCTTGGAAGTCGAGTCTTCTGAT 79 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||||||||||| || || |||||||| || ||||| || ||||| Sbjct 80 ACGATCGATAATGTGAAACAAAAGATCCAAGATAAAGAAGGTATTCCTCCTGATCAGCAG 139 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || ||| | |||||||| || || ||| | || || || || Sbjct 140 AGATTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTAGAACACTTTCTGACTACAATATC 199 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || || | ||||||||| | ||| Sbjct 200 CAGAAGGAGTCTACTCTTCACTTGGTTTTGAGATTGAGA 238 >seq45 Length=579175 Score = 113 bits (124), Expect = 1e-19 Identities = 162/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||||||||| || || | || || || || || ||| | || || || Sbjct 355112 AAAATGC---AAATTTTCGTTAAGACCTTGACGGGTAAGACCATTACCTTGGAAGTCGAG 355056 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || ||||| || || ||||| || |||||||| || || || |||||||| || Sbjct 355055 TCTTCTGATACCATTGACAATGTCAAGCAGAAGATTCAAGATAAGGAGGGAATCCCACCA 354996 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || | ||||| || || || || | || || || || ||| | |||| Sbjct 354995 GATCAGCAGAGATTGATCTTTGCTGGTAAGCAATTGGAGGACGGCAGAACTTTGTCCGAC 354936 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||| | ||||| ||||||||| |||| | ||| | ||| | ||| Sbjct 354935 TACAACATTCAAAAGGAATCAACATTGCACTTGGTTCTCAGATTGAGA 354888 >seq1 Length=1746572 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || || || ||| | ||||| || || ||| Sbjct 814055 CAAATTTTCGTTAAGACCTTGACCGGTAAGACCATTACCTTGGAGGTTGAGTCTTCTGAC 813996 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| || ||||| || ||||| || ||||| || || || ||||| Sbjct 813995 ACTATTGACAATGTCAAGCAGAAGATCCAAGACAAGGAGGGAATTCCACCTGATCAGCAG 813936 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || ||| | || ||||| || || | | || || ||| || Sbjct 813935 AGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGAACATTGTCAGACTACAACATC 813876 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || ||||| || |||| | || |||||| | ||| Sbjct 813875 CAGAAGGAATCCACCTTGCACTTAGTCTTGAGATTGAGA 813837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730027866744