Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq241 196 5e-45 seq22 194 2e-44 >seq241 Length=19529 Score = 196 bits (216), Expect = 5e-45 Identities = 585/889 (66%), Gaps = 24/889 (3%) Strand=Plus/Plus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 |||||| | ||||||| || ||| | |||||| ||||| || || || || | || Sbjct 8909 AACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAA 8968 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAGC--TGAAAA-TATCTTAGAGTACCC 16017 ||| || |||||||| |||||||| ||||||||| | || | | | |||| |||| Sbjct 8969 AGAAATGTTTTCCATGAAATCAAATGGATTAGTAACATTGTATACTTTCTTGT--TACCT 9026 Query 16018 CAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATT 16077 || | ||| |||||||| || || ||||| || ||||||||||| |||| || || Sbjct 9027 AAGGCCAACAAC-AATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTT 9085 Query 16078 AATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGC 16137 || || | | || |||||||| | || || | | || || | |||| || Sbjct 9086 CATACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGC 9145 Query 16138 TTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTG-TATGGTTT--AGGTGTTTAAA 16194 ||| |||| || | | | | || | | || | || ||| | || ||| Sbjct 9146 TTCAGTAATAATTT---TTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAA 9202 Query 16195 CATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAA 16254 || || ||| || ||||| |||| ||||| ||||||| || | ||||| || || Sbjct 9203 CAATAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAA 9262 Query 16255 AGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGA 16314 ||| |||||||||||| |||| || || |||||||| || | ||||||||| || Sbjct 9263 AGTCAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACT 9322 Query 16315 AAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTT 16374 |||||| ||||| ||||| | ||||| || | ||||| ||| | ||| || || | Sbjct 9323 AAAGAAAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATC 9382 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || |||||||||| |||| || ||||| | || ||||| || | | || Sbjct 9383 ATCTTGAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAAT 9442 Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 ||| ||||| || | || ||| ||| ||| |||| || || ||||| | |||| Sbjct 9443 GGCATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGA 9502 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 ||| ||||||| || ||||| || || || || || || ||||| || || || Sbjct 9503 GTAGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTC 9562 Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | | ||| ||||| | || ||| | ||| ||| || ||||| ||| Sbjct 9563 GGGAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGA 9622 Query 16615 TGCAGCAAAAAACGCCAATATGTGCT-TA---ATGAAATATTTTTC-GTCAGATGTAA-- 16667 ||||| ||||| ||||||| || || | |||||| |||| | || || Sbjct 9623 AGCAGCGAAAAATGCCAATA----CTCTAGAGACAAAATATCTTTCATTTTCATTCAATT 9678 Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAG 16727 ||| ||| || | |||||||| | ||| | |||||| | ||||| || || Sbjct 9679 TGTTATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAG 9738 Query 16728 CCACTGCCTTTTTATACATTTTCCAAATATCATTGTAT-TGTATGGGAA 16775 | | || || ||||| | |||||||| |||| |||| || |||||| Sbjct 9739 CTTCAGCTTTCTTATAAAAGTTCCAAATTTCATGGTATCTGATTGGGAA 9787 >seq22 Length=82586 Score = 194 bits (214), Expect = 2e-44 Identities = 491/734 (67%), Gaps = 26/734 (4%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||||||| ||| | ||||| ||||| |||||||| || | || || ||||||| Sbjct 9501 TTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAATGAGATATTTT 9442 Query 15972 CCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCAGTTCCGTAACT 16030 ||||||||||||| ||||||||| | | |||| || | | || || | ||| | Sbjct 9441 CCATAAAATCAAATGGATTAGTAACATTGTAATACTTTTTATTTCCAAAGGCCACTAA-T 9383 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 |||| ||| || |||||||| | ||| || ||||| ||||| ||||| ||||| | | Sbjct 9382 AATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATAAA 9323 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 ||| ||||| || | | ||| ||| || || || || || || ||||||| Sbjct 9322 GATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGAT- 9264 Query 16151 TCGGTGGCTC-GTG-TTTC---AGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACG 16205 | ||| || |||| ||| ||| ||| |||| | || | | ||| | Sbjct 9263 ----TTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGG 9208 Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTG 16265 | | || || | |||||||||| || || | ||| || ||||| || || |||| Sbjct 9207 CATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTG 9148 Query 16266 GCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATAC 16325 |||| || | ||||||||||||||| || || ||||| || || || ||||||| Sbjct 9147 GCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAATATAC 9088 Query 16326 CCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCC 16385 | ||||| | ||||| || | |||| || || ||| |||||| | | |||||| Sbjct 9087 CTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGAATCC 9028 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAAC- 16444 | | |||| |||||||||| | | || | || |||| || || |||||| Sbjct 9027 ACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTAAACA 8968 Query 16445 --AATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTT 16502 || | | ||| || ||| || | | || || || || | || || | | Sbjct 8967 AAAAGTCCGCTTCTT-CTG--GGTCCTTGAAGTATGTTTCGATTAACAACGAATAAGTCT 8911 Query 16503 CTGAGTGTATGTTCTCTATGGCTATCTGAAA--TCCATAGAAGCATCGAGCCTCCGCTAT 16560 |||| || ||||| || || |||||||| | ||| || | ||||||| | ||| Sbjct 8910 CTGAATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAG--TTGAGCCTCTGGTAT 8853 Query 16561 TTGTACTTC--CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCA 16618 ||||||||| ||| ||| | |||| ||| ||||||||| || ||||| || ||| Sbjct 8852 TTGTACTTCAGCACAGAAATT--TTCCACCAAGTTCTCATTGACAATACCATCCGAGGCA 8795 Query 16619 GCAAAAAACGCCAA 16632 ||||| || ||||| Sbjct 8794 GCAAAGAATGCCAA 8781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511409426494960