Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq78 168 1e-36 seq221 152 8e-32 >seq78 Length=41181 Score = 168 bits (186), Expect = 1e-36 Identities = 445/686 (65%), Gaps = 50/686 (7%) Strand=Plus/Minus Query 205330 AATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTA 205389 ||||| |||||| | ||||| | | ||| ||||||| || || ||| ||||||| Sbjct 32026 AATTTAGGAAATTGTTTTGGAATTCTTTCAAATTGTTCCTTCAAGGCATCTATATGATCC 31967 Query 205390 ACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAA 205449 | ||| | |||||||| ||| | | ||||||| ||||| | | || | | Sbjct 31966 AAATAGACATGTGCATCACCTAAAGTATGAATGAATTCGCCACAGTCCATATCCACCACA 31907 Query 205450 TGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCC 205509 ||||||||||| | ||| || || || |||| |||||||||||||||||| ||| Sbjct 31906 TGTGCAATCATCTTAGTTAACAACGCGTAGGATGCAATATTAAATGGTACACCTAACCCC 31847 Query 205510 ATATCAGCTGATCTTTGATACATTTGACATG---------------------TAAGATAT 205548 |||||| ||||||||||||| | ||| | || | | Sbjct 31846 ATATCACAAGATCTTTGATACAATAAACAAGATAATTTTGGTTTGGCGGTTTTAGCTTGT 31787 Query 205549 TT---ATTATT-----------------------AATT-ACATGAAATTGTACAAAACA- 205580 || |||||| | || |||| |||||| |||||| | Sbjct 31786 TTGGGATTATTTGAGTCTGGTTGAGATGTAGGGAAGTTCACATAAAATTG-ACAAAATAC 31728 Query 205581 ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTAT 205640 |||||| || |||| |||| || ||| |||| |||||||| || | | || || Sbjct 31727 ATGACATGGAGGTAATGCCATTTTAGCAAAATCTGGTGGATTCCAAGCAGACATGATAAT 31668 Query 205641 ATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCC 205700 ||||| | ||| || |||| | ||| || |||| || | ||| ||||||||||| Sbjct 31667 TCTTCTATCATAAGGATTTGTTTTCAATTTTTTAATAACATCTTGTAACTGATCAAATCC 31608 Query 205701 TTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAA 205760 ||| |||||| | ||| ||| |||||| ||||||||||| | |||||| || Sbjct 31607 TTGGCCACTATAATCAGAATCACAATCTTTATATTCTGCACCAAAATGTCTCCATTGGAA 31548 Query 205761 ACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatata 205820 |||||||||||| || ||||| ||||| | || | | || || ||| | || | | Sbjct 31547 ACCATAAACTGGTCCCAAATCCCCTTCACGACGATGAGTCAATCCTAATTTGTCTAAAAA 31488 Query 205821 ttttaatgatccattttcatcccaaatatggattcctttattttttaGAATATTTGTATT 205880 | |||||||| | ||||| || | | ||| || | ||| || || | || Sbjct 31487 CTCACGAGATCCATTGCCTTCCCAGATTTTCACTCCCTTTTCGCTTAATATTTTAGCATC 31428 Query 205881 AGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTT 205940 ||| || |||| | ||||||||||||||| | || ||| ||| | |||| | ||| Sbjct 31427 AGTAGACCCAGCAACAAACCATAATAATTCATGAATAATCCCTTTTGAAAAAACCTTTTT 31368 Query 205941 TGTTGTAAATAATGGAAATGAATCAT 205966 || || ||||| ||||| | ||||| Sbjct 31367 AGTGGTTAATAAAGGAAAGGTATCAT 31342 >seq221 Length=21533 Score = 152 bits (168), Expect = 8e-32 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| || | ||||| |||| || ||||| || ||| |||| ||||| | Sbjct 9963 ACGATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACCATTACTTTAGAAGTTGAATCT 10022 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| || ||| ||| | || ||||||||||| ||||||||||| ||||| || Sbjct 10023 TCTGACACTATTGACAATGTCAAGTCCAAAATTCAAGACAAAGAAGGTATTCCACCAGAC 10082 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | |||||||| || |||||||| || || || |||| ||| || || Sbjct 10083 CAACAAAGATTAATTTTTGCTGGTAAACAATTGGAAGACGGTAGAACTTTATCTGACTAC 10142 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || || ||||| ||||| |||||||| ||||| || | ||| |||||||| ||| || Sbjct 10143 AACATCCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTAAGAGGTGGTGGTAAGAA 10201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755448653190400