Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23]
778 sequences; 14,044,856 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq78 168 1e-36
seq221 152 8e-32
>seq78
Length=41181
Score = 168 bits (186), Expect = 1e-36
Identities = 445/686 (65%), Gaps = 50/686 (7%)
Strand=Plus/Minus
Query 205330 AATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTA 205389
||||| |||||| | ||||| | | ||| ||||||| || || ||| |||||||
Sbjct 32026 AATTTAGGAAATTGTTTTGGAATTCTTTCAAATTGTTCCTTCAAGGCATCTATATGATCC 31967
Query 205390 ACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAA 205449
| ||| | |||||||| ||| | | ||||||| ||||| | | || | |
Sbjct 31966 AAATAGACATGTGCATCACCTAAAGTATGAATGAATTCGCCACAGTCCATATCCACCACA 31907
Query 205450 TGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCC 205509
||||||||||| | ||| || || || |||| |||||||||||||||||| |||
Sbjct 31906 TGTGCAATCATCTTAGTTAACAACGCGTAGGATGCAATATTAAATGGTACACCTAACCCC 31847
Query 205510 ATATCAGCTGATCTTTGATACATTTGACATG---------------------TAAGATAT 205548
|||||| ||||||||||||| | ||| | || | |
Sbjct 31846 ATATCACAAGATCTTTGATACAATAAACAAGATAATTTTGGTTTGGCGGTTTTAGCTTGT 31787
Query 205549 TT---ATTATT-----------------------AATT-ACATGAAATTGTACAAAACA- 205580
|| |||||| | || |||| |||||| |||||| |
Sbjct 31786 TTGGGATTATTTGAGTCTGGTTGAGATGTAGGGAAGTTCACATAAAATTG-ACAAAATAC 31728
Query 205581 ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTAT 205640
|||||| || |||| |||| || ||| |||| |||||||| || | | || ||
Sbjct 31727 ATGACATGGAGGTAATGCCATTTTAGCAAAATCTGGTGGATTCCAAGCAGACATGATAAT 31668
Query 205641 ATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCC 205700
||||| | ||| || |||| | ||| || |||| || | ||| |||||||||||
Sbjct 31667 TCTTCTATCATAAGGATTTGTTTTCAATTTTTTAATAACATCTTGTAACTGATCAAATCC 31608
Query 205701 TTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAA 205760
||| |||||| | ||| ||| |||||| ||||||||||| | |||||| ||
Sbjct 31607 TTGGCCACTATAATCAGAATCACAATCTTTATATTCTGCACCAAAATGTCTCCATTGGAA 31548
Query 205761 ACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatata 205820
|||||||||||| || ||||| ||||| | || | | || || ||| | || | |
Sbjct 31547 ACCATAAACTGGTCCCAAATCCCCTTCACGACGATGAGTCAATCCTAATTTGTCTAAAAA 31488
Query 205821 ttttaatgatccattttcatcccaaatatggattcctttattttttaGAATATTTGTATT 205880
| |||||||| | ||||| || | | ||| || | ||| || || | ||
Sbjct 31487 CTCACGAGATCCATTGCCTTCCCAGATTTTCACTCCCTTTTCGCTTAATATTTTAGCATC 31428
Query 205881 AGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTT 205940
||| || |||| | ||||||||||||||| | || ||| ||| | |||| | |||
Sbjct 31427 AGTAGACCCAGCAACAAACCATAATAATTCATGAATAATCCCTTTTGAAAAAACCTTTTT 31368
Query 205941 TGTTGTAAATAATGGAAATGAATCAT 205966
|| || ||||| ||||| | |||||
Sbjct 31367 AGTGGTTAATAAAGGAAAGGTATCAT 31342
>seq221
Length=21533
Score = 152 bits (168), Expect = 8e-32
Identities = 177/239 (74%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
|| |||||||| || | ||||| |||| || ||||| || ||| |||| ||||| |
Sbjct 9963 ACGATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACCATTACTTTAGAAGTTGAATCT 10022
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
||| || ||| ||| | || ||||||||||| ||||||||||| ||||| ||
Sbjct 10023 TCTGACACTATTGACAATGTCAAGTCCAAAATTCAAGACAAAGAAGGTATTCCACCAGAC 10082
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|||||||| | |||||||| || |||||||| || || || |||| ||| || ||
Sbjct 10083 CAACAAAGATTAATTTTTGCTGGTAAACAATTGGAAGACGGTAGAACTTTATCTGACTAC 10142
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
|| || ||||| ||||| |||||||| ||||| || | ||| |||||||| ||| ||
Sbjct 10143 AACATCCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTAAGAGGTGGTGGTAAGAA 10201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755448653190400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |