Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq241 320 2e-82 seq22 214 2e-50 >seq241 Length=19529 Score = 320 bits (354), Expect = 2e-82 Identities = 608/886 (69%), Gaps = 17/886 (2%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||| || || |||||| |||||||||||||| || || || | || ||||| || Sbjct 8918 TTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAAGAAATGTT 8977 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCGCATCCCAATTCCAA 16059 |||||| |||||||| ||||| | |||| | |||| || | | || || |||| Sbjct 8978 TTCCATGAAATCAAATGGATTAGT--AACATT-GTATACTTTCTTGTTACCTAAGGCCAA 9034 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 ||| |||||||| || || ||||| || || || ||| || | ||||||||| || | Sbjct 9035 CAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCATACCCAA 9094 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 || || || | || || || || | | ||| || | || ||| |||||| | || Sbjct 9095 CAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTTCAGTAAT 9154 Query 16180 TATATCTCTTACTACACTATTTAACGGAGG---GTTTAATAAGTGTTTAAACATTATACA 16236 || | || | ||| | | | | || |||| || || ||||| || ||| Sbjct 9155 AATTT---TTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAACAATAAACA 9211 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 |||||| ||| || || ||||| || || | || ||||||||||| || || | || Sbjct 9212 AGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCC 9271 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 |||||||| |||| ||||| | ||| || |||| |||||||||||| |||||| || Sbjct 9272 TGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAGAAAAT 9331 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416 |||||||||||| ||||| ||||| |||| ||||| ||| | | | || || Sbjct 9332 ACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATCTTGAAT 9391 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 |||||| ||||||| | ||||| | || || ||| || || | || |||||||| Sbjct 9392 CCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCATTAAA 9451 Query 16477 TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536 ||| |||| ||||| |||| || ||||| || |||| |||| || |||| Sbjct 9452 TAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGTAGGTTTC 9511 Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596 ||||||||| || ||||| || || ||||| || || || | ||||||| | ||| Sbjct 9512 TGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGGGAAGTTG 9571 Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 ||||||| | || |||| ||||||||| ||| || ||||| ||| || || Sbjct 9572 AACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAGCAGCGAA 9631 Query 16657 AAACGCAAGTATGTGTTTA-ATAAAAtttttttCGTTATC--TGAAAGTTTTA-ACCAGT 16712 ||| || | || | | | | ||||| | |||| || || | || | ||| ||||| Sbjct 9632 AAATGCCAATA-CTCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTTATTCCAGT 9690 Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 || |||||||| ||||||| ||||| | ||||| |||||||| |||| || | Sbjct 9691 CATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTTCAGCTTTCT 9750 Query 16773 TATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATA 16818 |||| | ||||| || || | ||| || || |||| ||||| Sbjct 9751 TATAAAAGTTCCAAATTTCATGGTATCTGATTGGGAACATCACATA 9796 >seq22 Length=82586 Score = 214 bits (236), Expect = 2e-50 Identities = 570/862 (66%), Gaps = 33/862 (4%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| || ||| ||||||||||||||||||||| ||||| || | ||||| |||||| Sbjct 9502 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAATGAGATATTT 9443 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAAC-----AATAGTATTTATCGCATCCCAATTCCA 16058 |||||||||||||| ||||| | ||| |||| | ||||| ||| || ||| Sbjct 9442 TCCATAAAATCAAATGGATTAGT--AACATTGTAATACTTTTTAT---TTCCAAAGGCCA 9388 Query 16059 ACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTA 16118 ||||||| ||| || |||||||| | |||||| ||| || ||||| |||||||| | Sbjct 9387 CTAATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCA 9328 Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 ||| || || | || || | ||| | ||||| || ||| | || || || | | Sbjct 9327 ATAAAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAA 9268 Query 16179 TTATATCTCTTACTACACTATTTAACG-GAGGGTTTA----ATAAGTGTTTAAACATTAT 16233 | || || || | |||| | || |||||| ||| | || | | Sbjct 9267 TGAT-----TTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAA 9213 Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| ||| |||| || | |||||||| | | || || || || |||||||| | Sbjct 9212 ACAGGCATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAA 9153 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 |||||||| | || | ||| || | ||| || || || ||||| |||||| || || Sbjct 9152 TCCTGGCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAA 9093 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 |||||||||||| || ||||| |||||||||| |||| | ||| || | || Sbjct 9092 TATACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTG 9033 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 ||||| | | ||||||| ||||||| | | | | || || || || ||||| Sbjct 9032 AATCCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATT 8973 Query 16474 AAATAAATAAtttttttCTT-TGCTATCTAAAATATAAGTATCTATTAGTAAACTATACA 16532 ||| ||| | | ||||| || || || || || || |||| || ||| Sbjct 8972 AAACAAAAAGTCCGCTTCTTCTGGGTCCTTGAA-GTATGTTTCGATTAACAACGAATAAG 8914 Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592 | |||||||| || || ||||| |||||||| || | | ||| || | || Sbjct 8913 TCTCTGAATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCTCTGGTA 8854 Query 16593 TTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 |||||||||||| | || |||| | ||||| || || || || ||||| || | Sbjct 8853 TTTGTACTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGGCAG 8794 Query 16653 CAAAAAACGCAAGTA----TGTGTTTAATAAAAttt--ttttCGTT-ATCTGAAAGTTTT 16705 |||| || || | | | | | || || ||| |||||||| || | | ||| Sbjct 8793 CAAAGAATGCCAACACTCGGGAGATGAAAAATCTTTCATTTTCGTTCATTTTATTGTT-- 8736 Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765 |||||| | |||||||| ||| || | |||||| | |||||||| || || | Sbjct 8735 --CCAGTCGGCCAAATCTTTACTTAAGTCAAGCTCTTCAGCTGTCCAAAACGAGGCCAAC 8678 Query 16766 GCCTTTTTATACATTTTCCATA 16787 | |||||| || | || ||||| Sbjct 8677 GACTTTTTGTAGAATTGCCATA 8656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462507502070800