Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23]
778 sequences; 14,044,856 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq65 127 2e-24
seq241 125 6e-24
seq221 96.9 3e-15
>seq65
Length=45114
Score = 127 bits (140), Expect = 2e-24
Identities = 414/641 (65%), Gaps = 4/641 (1%)
Strand=Plus/Minus
Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400
||| || | | |||| || | || || ||||||| ||| ||||| || | ||| |
Sbjct 19209 TTCGACTCTTTTCATGAACAAGTCTGGAATCCATAAAGCTGGGAACAAATCTCTGGCTCT 19150
Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460
| || ||||| || |||||| | | || | || || || | ||| |||||
Sbjct 19149 GATTTCTTCTTTACCATGATTCTTTCTGATGTCAATGAAATCAAAGATGTCACTGTGCCA 19090
Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520
|| || | ||| | |||||| || || ||||| || || || || ||||| || |||||
Sbjct 19089 TGGTTCTAAGTACAAGGCAAAGGCACCAGGTCTTTTGTTACCACCTTGATCAACATAACG 19030
Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580
|| ||||| ||| ||||||||| ||| || | | ||| || || | || ||
Sbjct 19029 TGCAGTGTTATTGAACACTCTTACCATTGGAATAATACCATTAGAAGTACCATTGGTACC 18970
Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640
|| | | ||| | | |||| |||||| | || ||||| || ||||| |
Sbjct 18969 AGCAATGTAAGCACCAGTAGAACGAATGTTGTGGATATGTAAACCAATCCCTCCTGCACT 18910
Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700
||| || |||| || || ||| | ||| || || || || || || || || ||
Sbjct 18909 TTTTGAAATCAAAGCACACGATTTTAAAGTATCATATATACCTTCAATAGAATCATCCTT 18850
Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760
| || | |||||| || ||||||||||||| | | || ||| | || |||||
Sbjct 18849 CATAGCAAGCAAGAAGCATGAAGACATTTGCGGTCTTGGTGTACCAGCATTGAACAAGCA 18790
Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820
|| | || |||||| ||| | ||||| | || || || || ||| |
Sbjct 18789 AGGAGAACCATGGGTAAAGAATCTTTGAGACATCAAGTTATAGGTTTCAATGACTCTTGG 18730
Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCG-- 23878
|| || | ||||| ||||| | ||||| | ||| |||| | ||| ||||| |||
Sbjct 18729 TATATCATTACCGTGGATACCAACAGCGACTCTCATGATCAAATGTTGGGGTCTTTCGGC 18670
Query 23879 ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAG 23938
| | | | ||||| || |||| ||| || | || || ||||| || ||||||||
Sbjct 18669 AACCTTA--CCGTTGATACGTAACAAATAAGATCTTTCCAAAGTTTTGAACCCAAAATAA 18612
Query 23939 TCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979
| ||| |||| || | |||| || |||||||| || ||
Sbjct 18611 TTGTAGCTAAAATCTCTGTCGTAAACAATGGCCGAGTTTAA 18571
>seq241
Length=19529
Score = 125 bits (138), Expect = 6e-24
Identities = 497/773 (64%), Gaps = 13/773 (2%)
Strand=Plus/Minus
Query 57534 CGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCA 57593
||| | | ||| ||||| || || ||| | || ||||||||| | || || || ||
Sbjct 9802 CGTCGTTATGTGATGTTCCCAATCAGATACCATGAAATTTGGAACTTTTATAAGAAAGCT 9743
Query 57594 GAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT 57653
||||| || || ||||||| ||||||| | || || ||| ||| || || ||| ||
Sbjct 9742 GAAGCTTCTTTCTGGACCGCCGAAGAAATCGATTTGAGTAAAGATTTGGATGACTGGAAT 9683
Query 57654 TCCC---TCAAAGAATCTGAGAGAAATTTTAT-TAAACACGTGTTGGCGTTTTTCGCCGC 57709
| | || ||| ||| ||| ||||| | | | | || ||||| |||||||| ||
Sbjct 9682 AACAAATTGAATGAAAATGAAAGATATTTTGTCTCTAGA-GTATTGGCATTTTTCGCTGC 9624
Query 57710 ATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGAC 57769
|| |||||||||||| || || || | |||| || || ||||| ||| | |
Sbjct 9623 TTCTGATGGTATTGTTGGTGAAAACTTAATTGAAAACTTCTCGACTGAAGTTCAACTTCC 9564
Query 57770 GGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTA 57829
|| || | || || ||||| || ||| | || |||||| | |||||||||| ||
Sbjct 9563 CGAAGCCAAATCATTCTACGGTTTCCAAATCATGATGGAAAACATTCATTCAGAAACCTA 9504
Query 57830 TTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA-ACGTAGAC-TGTTCAAC 57887
|| || | || || || ||| | || | | | | |||| || || | || ||
Sbjct 9503 CTCTTTATTAATTGAAACTTACATAAA--AGATCCTCAAGAAGCCGATTACTTATTTAAT 9446
Query 57888 GCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA 57947
|| || | | || || || ||||| || || ||| | ||||||||||| ||
Sbjct 9445 GCCATTGCCAATATTCCATGTATTCAAAAGAAAGCTGACTGGGCTATCAAATGGATTCAA 9386
Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007
| ||| || | || || || | || || || || || |||||||| |||
Sbjct 9385 GATGATGAAGCCTTGTATGGTGAAAGATTAGTTGCCTTTGCTGCAGTTGAAGGTATTTTC 9326
Query 58008 TTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTG 58067
||| || ||||| | || || ||| |||| || | || | ||||| || ||
Sbjct 9325 TTTAGTGGTTCATTTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTAATGCCAGGGTTG 9266
Query 58068 ACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127
|| || ||||||||||| | | || || ||| | || ||||| ||||| || ||
Sbjct 9265 ACTTTCTCAAACGAGTTGATTTGCAGAGATGAAGGTTTACACACTGACTTTGCTTGTTTA 9206
Query 58128 ATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTG--GACATTATCACCG 58185
||| |||| | || | ||| | | || | | ||| | ||||| || |
Sbjct 9205 TTGTTTGCTCATTTGCAAAACAGACCATCTCCAGA--GATTGTTGAAAAAATTATTACTG 9148
Query 58186 AGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTA 58245
| || || | | || || |||| | ||||| || || || ||| || || | ||||
Sbjct 9147 AAGCTGTTGATGTTGAGAAAGAGTACTTTACCGATGCTCTTCCAGTGTCCTTGTTGGGTA 9088
Query 58246 TGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298
||||| | | ||||||| | |||||||| || || || || ||| | |||
Sbjct 9087 TGAACTGTAACTTGATGTGTCAATACATTGAATTCGTCGCTGATAGATTGTTG 9035
>seq221
Length=21533
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| | || || ||||| || || | || |||||| | ||
Sbjct 9966 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACCATTACTTTAGAAGTTGAATCTTCT 10025
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | || | ||||| | ||| ||||| ||||| | || || |||||
Sbjct 10026 GACACTATTGACAATGTCAAGTCCAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAA 10085
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| | |||| || ||||| ||||| ||||||||| || ||| | || || |||
Sbjct 10086 CAAAGATTAATTTTTGCTGGTAAACAATTGGAAGACGGTAGAACTTTATCTGACTACAAC 10145
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| ||||| ||||| ||| | || |||| | ||| | || || |||
Sbjct 10146 ATCCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTAAGAGGTGGT 10193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445762064921760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |