Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq65 127 2e-24 seq241 125 6e-24 seq221 96.9 3e-15 >seq65 Length=45114 Score = 127 bits (140), Expect = 2e-24 Identities = 414/641 (65%), Gaps = 4/641 (1%) Strand=Plus/Minus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| || | | |||| || | || || ||||||| ||| ||||| || | ||| | Sbjct 19209 TTCGACTCTTTTCATGAACAAGTCTGGAATCCATAAAGCTGGGAACAAATCTCTGGCTCT 19150 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | || ||||| || |||||| | | || | || || || | ||| ||||| Sbjct 19149 GATTTCTTCTTTACCATGATTCTTTCTGATGTCAATGAAATCAAAGATGTCACTGTGCCA 19090 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 || || | ||| | |||||| || || ||||| || || || || ||||| || ||||| Sbjct 19089 TGGTTCTAAGTACAAGGCAAAGGCACCAGGTCTTTTGTTACCACCTTGATCAACATAACG 19030 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 || ||||| ||| ||||||||| ||| || | | ||| || || | || || Sbjct 19029 TGCAGTGTTATTGAACACTCTTACCATTGGAATAATACCATTAGAAGTACCATTGGTACC 18970 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | | ||| | | |||| |||||| | || ||||| || ||||| | Sbjct 18969 AGCAATGTAAGCACCAGTAGAACGAATGTTGTGGATATGTAAACCAATCCCTCCTGCACT 18910 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 ||| || |||| || || ||| | ||| || || || || || || || || || Sbjct 18909 TTTTGAAATCAAAGCACACGATTTTAAAGTATCATATATACCTTCAATAGAATCATCCTT 18850 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | || | |||||| || ||||||||||||| | | || ||| | || ||||| Sbjct 18849 CATAGCAAGCAAGAAGCATGAAGACATTTGCGGTCTTGGTGTACCAGCATTGAACAAGCA 18790 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 || | || |||||| ||| | ||||| | || || || || ||| | Sbjct 18789 AGGAGAACCATGGGTAAAGAATCTTTGAGACATCAAGTTATAGGTTTCAATGACTCTTGG 18730 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCG-- 23878 || || | ||||| ||||| | ||||| | ||| |||| | ||| ||||| ||| Sbjct 18729 TATATCATTACCGTGGATACCAACAGCGACTCTCATGATCAAATGTTGGGGTCTTTCGGC 18670 Query 23879 ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAG 23938 | | | | ||||| || |||| ||| || | || || ||||| || |||||||| Sbjct 18669 AACCTTA--CCGTTGATACGTAACAAATAAGATCTTTCCAAAGTTTTGAACCCAAAATAA 18612 Query 23939 TCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 | ||| |||| || | |||| || |||||||| || || Sbjct 18611 TTGTAGCTAAAATCTCTGTCGTAAACAATGGCCGAGTTTAA 18571 >seq241 Length=19529 Score = 125 bits (138), Expect = 6e-24 Identities = 497/773 (64%), Gaps = 13/773 (2%) Strand=Plus/Minus Query 57534 CGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCA 57593 ||| | | ||| ||||| || || ||| | || ||||||||| | || || || || Sbjct 9802 CGTCGTTATGTGATGTTCCCAATCAGATACCATGAAATTTGGAACTTTTATAAGAAAGCT 9743 Query 57594 GAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT 57653 ||||| || || ||||||| ||||||| | || || ||| ||| || || ||| || Sbjct 9742 GAAGCTTCTTTCTGGACCGCCGAAGAAATCGATTTGAGTAAAGATTTGGATGACTGGAAT 9683 Query 57654 TCCC---TCAAAGAATCTGAGAGAAATTTTAT-TAAACACGTGTTGGCGTTTTTCGCCGC 57709 | | || ||| ||| ||| ||||| | | | | || ||||| |||||||| || Sbjct 9682 AACAAATTGAATGAAAATGAAAGATATTTTGTCTCTAGA-GTATTGGCATTTTTCGCTGC 9624 Query 57710 ATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGAC 57769 || |||||||||||| || || || | |||| || || ||||| ||| | | Sbjct 9623 TTCTGATGGTATTGTTGGTGAAAACTTAATTGAAAACTTCTCGACTGAAGTTCAACTTCC 9564 Query 57770 GGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTA 57829 || || | || || ||||| || ||| | || |||||| | |||||||||| || Sbjct 9563 CGAAGCCAAATCATTCTACGGTTTCCAAATCATGATGGAAAACATTCATTCAGAAACCTA 9504 Query 57830 TTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA-ACGTAGAC-TGTTCAAC 57887 || || | || || || ||| | || | | | | |||| || || | || || Sbjct 9503 CTCTTTATTAATTGAAACTTACATAAA--AGATCCTCAAGAAGCCGATTACTTATTTAAT 9446 Query 57888 GCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA 57947 || || | | || || || ||||| || || ||| | ||||||||||| || Sbjct 9445 GCCATTGCCAATATTCCATGTATTCAAAAGAAAGCTGACTGGGCTATCAAATGGATTCAA 9386 Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007 | ||| || | || || || | || || || || || |||||||| ||| Sbjct 9385 GATGATGAAGCCTTGTATGGTGAAAGATTAGTTGCCTTTGCTGCAGTTGAAGGTATTTTC 9326 Query 58008 TTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTG 58067 ||| || ||||| | || || ||| |||| || | || | ||||| || || Sbjct 9325 TTTAGTGGTTCATTTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTAATGCCAGGGTTG 9266 Query 58068 ACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127 || || ||||||||||| | | || || ||| | || ||||| ||||| || || Sbjct 9265 ACTTTCTCAAACGAGTTGATTTGCAGAGATGAAGGTTTACACACTGACTTTGCTTGTTTA 9206 Query 58128 ATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTG--GACATTATCACCG 58185 ||| |||| | || | ||| | | || | | ||| | ||||| || | Sbjct 9205 TTGTTTGCTCATTTGCAAAACAGACCATCTCCAGA--GATTGTTGAAAAAATTATTACTG 9148 Query 58186 AGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTA 58245 | || || | | || || |||| | ||||| || || || ||| || || | |||| Sbjct 9147 AAGCTGTTGATGTTGAGAAAGAGTACTTTACCGATGCTCTTCCAGTGTCCTTGTTGGGTA 9088 Query 58246 TGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298 ||||| | | ||||||| | |||||||| || || || || ||| | ||| Sbjct 9087 TGAACTGTAACTTGATGTGTCAATACATTGAATTCGTCGCTGATAGATTGTTG 9035 >seq221 Length=21533 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| | || || ||||| || || | || |||||| | || Sbjct 9966 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACCATTACTTTAGAAGTTGAATCTTCT 10025 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | ||| ||||| ||||| | || || ||||| Sbjct 10026 GACACTATTGACAATGTCAAGTCCAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAA 10085 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | |||| || ||||| ||||| ||||||||| || ||| | || || ||| Sbjct 10086 CAAAGATTAATTTTTGCTGGTAAACAATTGGAAGACGGTAGAACTTTATCTGACTACAAC 10145 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||| ||||| ||| | || |||| | ||| | || || ||| Sbjct 10146 ATCCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTAAGAGGTGGT 10193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762064921760