Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq241 149 1e-30 seq22 122 2e-22 seq78 98.7 2e-15 >seq241 Length=19529 Score = 149 bits (164), Expect = 1e-30 Identities = 302/443 (68%), Gaps = 13/443 (3%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||||||||||||||| || |||||||||||| |||| || || || |||||| Sbjct 9355 GTTGCCTTTGCTGCAGTTGAAGGTATTTTCTTTAGTGGTTCATTTGCTTCTATCTTCTGG 9296 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || || ||| | |||| || | || | ||| || ||||| |||| || || Sbjct 9295 TTGAAAAAGAGAGGTTTAATGCCAGGGTTGACTTTCTCAAACGAGTTGATTTGCAGAGAT 9236 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 |||||| | || |||||||| || | |||| | ||| | | ||| Sbjct 9235 GAAGGTTTACACACTGACTTTGCTTGTTTATTGTTTGCTCA---TTTGCAAAACAGACCA 9179 Query 102098 TCAAGAGAAAGGATTCTTG---AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 || ||| |||| ||| ||||| | |||||||| || |||| |||| | Sbjct 9178 TCTCCAGA---GATTGTTGAAAAAATTATTACTGAAGCTGTTGATGTTGAGAAAGAGTAC 9122 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 | || | | | || || || || |||| |||||||| || |||||| | || ||| Sbjct 9121 TTTACCGATGCTCTTCCAGTGTCCTTGTTGGGTATGAACTGTAACTTGATGTGTCAATAC 9062 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAATG 102272 |||||||| || || |||| | | ||| | | | || || || |||| | || |||| Sbjct 9061 ATTGAATTCGTCGCTGATAGATTGTTGTTGGCCTTAGGTAACAAG-AAAGTA-TACAATG 9004 Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332 |||| || || || |||||||| || ||||| | | ||||||||| || |||| Sbjct 9003 TTACTAATCCATTTGATTTCATGGAAAACATTTCTTTGGCTGGTAAGACCAATTTCTTTG 8944 Query 102333 AAAAGAGAGTCGCCGAGTATCAA 102355 |||| ||||| | || || ||| Sbjct 8943 AAAAAAGAGTTTCAGACTACCAA 8921 >seq22 Length=82586 Score = 122 bits (134), Expect = 2e-22 Identities = 290/438 (66%), Gaps = 3/438 (1%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| |||||||| |||||||| || || || |||||| | || ||| | ||||||||| Sbjct 9066 GTTGCGTTTGCTGCCGTTGAAGGTATATTTTTCAGTGGTTCGTTTGCAGCAATTTTCTGG 9125 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| ||||| | |||| || | || | || ||||| || |||| | ||| Sbjct 9126 TTAAAGAAAAGGGGGTTGATGCCAGGATTGACATTTTCGAATGAATTGATTTGCCGAGAC 9185 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 ||||| |||| || | ||| || || | || | ||| ||| || Sbjct 9186 GAAGGGATTCACACGGATTATGCCTGTTTGTTATTCTCGTA---TTTAAAGAATAAACCT 9242 Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157 || ||||| ||| |||| | || || || || ||||| || ||| | || Sbjct 9243 TCTCCAGAAATCATTGAGAAAATCATTACCGAGGCTGTGACTATTGAGAAAAAATATTTC 9302 Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217 | | | | || || || ||| |||||||||| || | |||||| ||||||| || Sbjct 9303 AGCGATGCGCTTCCAGTATCTTTATTGGGAATGAATTGTGACTTGATGTGCCAGTATGTT 9362 Query 102218 GAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACC 102277 |||||||| || ||| | |||| || | | ||| ||||| | || |||||||| Sbjct 9363 GAATTTGTTGCTGATCGATTATTAGTGGCCTTTGGAAATAAAAAGTATTACAATGTTACT 9422 Query 102278 AACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAG 102337 || || || || ||||| ||||| || | | ||| || || || ||||||||| Sbjct 9423 AATCCATTTGATTTTATGGAAAATATCTCATTGGCTGGTAAAACTAATTTCTTTGAAAAG 9482 Query 102338 AGAGTCGCCGAGTATCAA 102355 ||||| | || || ||| Sbjct 9483 AGAGTTTCTGATTACCAA 9500 >seq78 Length=41181 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 || || ||||||||||| || || || ||||||||| | ||||||||||| |||||| | Sbjct 31521 GAAGGGGATTTGGGACCAGTTTATGGTTTCCAATGGAGACATTTTGGTGCAGAATATAAA 31580 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTA--AAGA 35510 ||| ||| ||||||| ||| | || ||||||| || ||| || || || | Sbjct 31581 GATTGTGATTCTGATTATAGTGGCCAAGGATTTGATCAGTT--ACAAGATGTTATTAAAA 31638 Query 35511 CCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATC 35570 ||| | |||||| |||||||||| || || ||| | || |||||||| ||| Sbjct 31639 AATTGAAAACAAATCCTTATGATAGAAGAATTATCATGTCTGCTTGGAATCCACCAGATT 31698 Query 35571 TTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTG 35620 || ||||| | |||||||| || | | ||||||||||||| Sbjct 31699 TTGCTAAAATGGCATTACCTCCATGTCATGTATTTTGTCAATTTTATGTG 31748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989574135702990