Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23]
778 sequences; 14,044,856 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq241 149 1e-30
seq22 122 2e-22
seq78 98.7 2e-15
>seq241
Length=19529
Score = 149 bits (164), Expect = 1e-30
Identities = 302/443 (68%), Gaps = 13/443 (3%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
||||||||||||||||||||||| || |||||||||||| |||| || || || ||||||
Sbjct 9355 GTTGCCTTTGCTGCAGTTGAAGGTATTTTCTTTAGTGGTTCATTTGCTTCTATCTTCTGG 9296
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
| || || || ||| | |||| || | || | ||| || ||||| |||| || ||
Sbjct 9295 TTGAAAAAGAGAGGTTTAATGCCAGGGTTGACTTTCTCAAACGAGTTGATTTGCAGAGAT 9236
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097
|||||| | || |||||||| || | |||| | ||| | | |||
Sbjct 9235 GAAGGTTTACACACTGACTTTGCTTGTTTATTGTTTGCTCA---TTTGCAAAACAGACCA 9179
Query 102098 TCAAGAGAAAGGATTCTTG---AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154
|| ||| |||| ||| ||||| | |||||||| || |||| |||| |
Sbjct 9178 TCTCCAGA---GATTGTTGAAAAAATTATTACTGAAGCTGTTGATGTTGAGAAAGAGTAC 9122
Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214
| || | | | || || || || |||| |||||||| || |||||| | || |||
Sbjct 9121 TTTACCGATGCTCTTCCAGTGTCCTTGTTGGGTATGAACTGTAACTTGATGTGTCAATAC 9062
Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAATG 102272
|||||||| || || |||| | | ||| | | | || || || |||| | || ||||
Sbjct 9061 ATTGAATTCGTCGCTGATAGATTGTTGTTGGCCTTAGGTAACAAG-AAAGTA-TACAATG 9004
Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332
|||| || || || |||||||| || ||||| | | ||||||||| || ||||
Sbjct 9003 TTACTAATCCATTTGATTTCATGGAAAACATTTCTTTGGCTGGTAAGACCAATTTCTTTG 8944
Query 102333 AAAAGAGAGTCGCCGAGTATCAA 102355
|||| ||||| | || || |||
Sbjct 8943 AAAAAAGAGTTTCAGACTACCAA 8921
>seq22
Length=82586
Score = 122 bits (134), Expect = 2e-22
Identities = 290/438 (66%), Gaps = 3/438 (1%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
||||| |||||||| |||||||| || || || |||||| | || ||| | |||||||||
Sbjct 9066 GTTGCGTTTGCTGCCGTTGAAGGTATATTTTTCAGTGGTTCGTTTGCAGCAATTTTCTGG 9125
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
| ||||| ||||| | |||| || | || | || ||||| || |||| | |||
Sbjct 9126 TTAAAGAAAAGGGGGTTGATGCCAGGATTGACATTTTCGAATGAATTGATTTGCCGAGAC 9185
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097
||||| |||| || | ||| || || | || | ||| ||| ||
Sbjct 9186 GAAGGGATTCACACGGATTATGCCTGTTTGTTATTCTCGTA---TTTAAAGAATAAACCT 9242
Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157
|| ||||| ||| |||| | || || || || ||||| || ||| | ||
Sbjct 9243 TCTCCAGAAATCATTGAGAAAATCATTACCGAGGCTGTGACTATTGAGAAAAAATATTTC 9302
Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217
| | | | || || || ||| |||||||||| || | |||||| ||||||| ||
Sbjct 9303 AGCGATGCGCTTCCAGTATCTTTATTGGGAATGAATTGTGACTTGATGTGCCAGTATGTT 9362
Query 102218 GAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACC 102277
|||||||| || ||| | |||| || | | ||| ||||| | || ||||||||
Sbjct 9363 GAATTTGTTGCTGATCGATTATTAGTGGCCTTTGGAAATAAAAAGTATTACAATGTTACT 9422
Query 102278 AACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAG 102337
|| || || || ||||| ||||| || | | ||| || || || |||||||||
Sbjct 9423 AATCCATTTGATTTTATGGAAAATATCTCATTGGCTGGTAAAACTAATTTCTTTGAAAAG 9482
Query 102338 AGAGTCGCCGAGTATCAA 102355
||||| | || || |||
Sbjct 9483 AGAGTTTCTGATTACCAA 9500
>seq78
Length=41181
Score = 98.7 bits (108), Expect = 2e-15
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452
|| || ||||||||||| || || || ||||||||| | ||||||||||| |||||| |
Sbjct 31521 GAAGGGGATTTGGGACCAGTTTATGGTTTCCAATGGAGACATTTTGGTGCAGAATATAAA 31580
Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTA--AAGA 35510
||| ||| ||||||| ||| | || ||||||| || ||| || || || |
Sbjct 31581 GATTGTGATTCTGATTATAGTGGCCAAGGATTTGATCAGTT--ACAAGATGTTATTAAAA 31638
Query 35511 CCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATC 35570
||| | |||||| |||||||||| || || ||| | || |||||||| |||
Sbjct 31639 AATTGAAAACAAATCCTTATGATAGAAGAATTATCATGTCTGCTTGGAATCCACCAGATT 31698
Query 35571 TTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTG 35620
|| ||||| | |||||||| || | | |||||||||||||
Sbjct 31699 TTGCTAAAATGGCATTACCTCCATGTCATGTATTTTGTCAATTTTATGTG 31748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989574135702990
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |