Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23]
778 sequences; 14,044,856 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq241 298 5e-76
seq22 288 1e-72
>seq241
Length=19529
Score = 298 bits (330), Expect = 5e-76
Identities = 512/738 (69%), Gaps = 4/738 (1%)
Strand=Plus/Plus
Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628
||||| || |||||| || || |||||||||||||||||| || || ||||| ||
Sbjct 8907 ATAACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCC 8966
Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACC 13687
| || || |||||||| |||||||||||||| | | |||| | ||||| | |||
Sbjct 8967 AAAGAAATGTTTTCCATGAAATCAAATGGATT-AGTAACATTGTATACTTTCTTGTTACC 9025
Query 13688 TAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATT 13747
|| | || | ||||||||||| | || ||||| |||||| |||| || | ||| ||
Sbjct 9026 TAAGGCCAACAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTT 9085
Query 13748 CATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC 13807
|||||| | | || |||| || ||| || | ||||| || | | |||||
Sbjct 9086 CATACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGC 9145
Query 13808 CTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13867
|| | ||||| || || |||||| ||| || | || | ||| ||| |
Sbjct 9146 TTCAGTAATAATTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAACAA 9205
Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927
|||||| ||||| ||| || | || |||||||| | ||| | |||||||| || ||
Sbjct 9206 TAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGT 9265
Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987
|| |||||||| || |||| ||||| ||||| || || | ||||||||| || |||
Sbjct 9266 CAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAA 9325
Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT- 14046
||| || || |||||||||||||| || | ||||| ||| ||| || | |||| | |
Sbjct 9326 GAAAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATC 9385
Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106
| || |||||||| ||||||| |||| ||| |||| |||| | || | |||| |
Sbjct 9386 TTGA-ATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGG 9444
Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166
|||||||||| || || |||| || | | ||||| || ||||| | ||| |
Sbjct 9445 CATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGT 9504
Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226
| |||| || || ||||||||||| || || ||||| || || || | ||||| |
Sbjct 9505 AGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGG 9564
Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286
||| ||||| | | || |||| || |||||| ||| ||||||||| ||
Sbjct 9565 GAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAG 9624
Query 14287 CTGCAAAAAATGCCAATA 14304
| || |||||||||||||
Sbjct 9625 CAGCGAAAAATGCCAATA 9642
>seq22
Length=82586
Score = 288 bits (318), Expect = 1e-72
Identities = 505/727 (69%), Gaps = 10/727 (1%)
Strand=Plus/Minus
Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640
||||| || ||| |||||| ||||||||||| ||||||||||| ||| ||| ||||||
Sbjct 9502 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAATGAGATATTT 9443
Query 13641 TCCATAAAATCAAATGGATTTATTGACATA--AACACTTTATCACAACCTAGTTCTAATA 13698
|||||||||||||||||||| | | |||| || ||||| | | || | | | ||
Sbjct 9442 TCCATAAAATCAAATGGATT-AGTAACATTGTAATACTTTTT-ATTTCCAAAGGCCACTA 9385
Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758
||||| |||||||| ||| |||| ||| || |||| || ||||||||||| || | ||
Sbjct 9384 ATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATA 9325
Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818
||| |||| || | | ||| ||| ||| || |||| ||||||||| | || |
Sbjct 9324 AAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGA 9265
Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13878
| | ||| || || |||||| || |||| || || | ||||| |||
Sbjct 9264 TTTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGGCAT 9205
Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938
|||| |||| || || |||| | ||| | ||| || |||||||| ||||||||||
Sbjct 9204 AATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTGGCA 9145
Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998
|||| || | ||| |||||||| || ||||| ||||| || || || ||||| || |
Sbjct 9144 TCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAATATACCTT 9085
Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCAT 14057
|||| ||||||||||| | |||| || || || | || | | || | || |||||
Sbjct 9084 CAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGA-ATCCAC 9026
Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117
| | ||||| || | ||||| | | || || || |||||||||||||||| |||
Sbjct 9025 CTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTAAACAAA 8966
Query 14118 TATTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175
| || ||||| | || |||||| |||||| || || | || ||| | || |
Sbjct 8965 AAGTCCGCTTCTTCTGGGTCCTTGAA--GTATGTTTCGATTAACAACGAATAAGTCTCTG 8908
Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235
| || ||||||||||| |||||||| || | | ||| || | |||||
Sbjct 8907 AATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCTCTGGTATTTGTA 8848
Query 14236 CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14295
|||| | | || |||| |||| || ||||| || |||||||| || ||||| |
Sbjct 8847 CTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGGCAGCAAAGA 8788
Query 14296 ATGCCAA 14302
|||||||
Sbjct 8787 ATGCCAA 8781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479723334645200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |