Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq241 298 5e-76 seq22 288 1e-72 >seq241 Length=19529 Score = 298 bits (330), Expect = 5e-76 Identities = 512/738 (69%), Gaps = 4/738 (1%) Strand=Plus/Plus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 ||||| || |||||| || || |||||||||||||||||| || || ||||| || Sbjct 8907 ATAACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCC 8966 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACC 13687 | || || |||||||| |||||||||||||| | | |||| | ||||| | ||| Sbjct 8967 AAAGAAATGTTTTCCATGAAATCAAATGGATT-AGTAACATTGTATACTTTCTTGTTACC 9025 Query 13688 TAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATT 13747 || | || | ||||||||||| | || ||||| |||||| |||| || | ||| || Sbjct 9026 TAAGGCCAACAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTT 9085 Query 13748 CATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC 13807 |||||| | | || |||| || ||| || | ||||| || | | ||||| Sbjct 9086 CATACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGC 9145 Query 13808 CTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13867 || | ||||| || || |||||| ||| || | || | ||| ||| | Sbjct 9146 TTCAGTAATAATTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAACAA 9205 Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 |||||| ||||| ||| || | || |||||||| | ||| | |||||||| || || Sbjct 9206 TAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGT 9265 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 || |||||||| || |||| ||||| ||||| || || | ||||||||| || ||| Sbjct 9266 CAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAA 9325 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT- 14046 ||| || || |||||||||||||| || | ||||| ||| ||| || | |||| | | Sbjct 9326 GAAAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATC 9385 Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 | || |||||||| ||||||| |||| ||| |||| |||| | || | |||| | Sbjct 9386 TTGA-ATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGG 9444 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 |||||||||| || || |||| || | | ||||| || ||||| | ||| | Sbjct 9445 CATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGT 9504 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 | |||| || || ||||||||||| || || ||||| || || || | ||||| | Sbjct 9505 AGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGG 9564 Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 ||| ||||| | | || |||| || |||||| ||| ||||||||| || Sbjct 9565 GAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAG 9624 Query 14287 CTGCAAAAAATGCCAATA 14304 | || ||||||||||||| Sbjct 9625 CAGCGAAAAATGCCAATA 9642 >seq22 Length=82586 Score = 288 bits (318), Expect = 1e-72 Identities = 505/727 (69%), Gaps = 10/727 (1%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||| || ||| |||||| ||||||||||| ||||||||||| ||| ||| |||||| Sbjct 9502 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAATGAGATATTT 9443 Query 13641 TCCATAAAATCAAATGGATTTATTGACATA--AACACTTTATCACAACCTAGTTCTAATA 13698 |||||||||||||||||||| | | |||| || ||||| | | || | | | || Sbjct 9442 TCCATAAAATCAAATGGATT-AGTAACATTGTAATACTTTTT-ATTTCCAAAGGCCACTA 9385 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||||| |||||||| ||| |||| ||| || |||| || ||||||||||| || | || Sbjct 9384 ATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATA 9325 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||| |||| || | | ||| ||| ||| || |||| ||||||||| | || | Sbjct 9324 AAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGA 9265 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13878 | | ||| || || |||||| || |||| || || | ||||| ||| Sbjct 9264 TTTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGGCAT 9205 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 |||| |||| || || |||| | ||| | ||| || |||||||| |||||||||| Sbjct 9204 AATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTGGCA 9145 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 |||| || | ||| |||||||| || ||||| ||||| || || || ||||| || | Sbjct 9144 TCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAATATACCTT 9085 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCAT 14057 |||| ||||||||||| | |||| || || || | || | | || | || ||||| Sbjct 9084 CAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGA-ATCCAC 9026 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 | | ||||| || | ||||| | | || || || |||||||||||||||| ||| Sbjct 9025 CTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTAAACAAA 8966 Query 14118 TATTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 | || ||||| | || |||||| |||||| || || | || ||| | || | Sbjct 8965 AAGTCCGCTTCTTCTGGGTCCTTGAA--GTATGTTTCGATTAACAACGAATAAGTCTCTG 8908 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 | || ||||||||||| |||||||| || | | ||| || | ||||| Sbjct 8907 AATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCTCTGGTATTTGTA 8848 Query 14236 CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14295 |||| | | || |||| |||| || ||||| || |||||||| || ||||| | Sbjct 8847 CTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGGCAGCAAAGA 8788 Query 14296 ATGCCAA 14302 ||||||| Sbjct 8787 ATGCCAA 8781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479723334645200