Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23]
778 sequences; 14,044,856 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq241 268 2e-66
seq221 149 1e-30
seq22 114 3e-20
>seq241
Length=19529
Score = 268 bits (296), Expect = 2e-66
Identities = 551/807 (68%), Gaps = 17/807 (2%)
Strand=Plus/Minus
Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819
|||||||| ||||| | |||||| | ||| || | | || || || ||||| ||
Sbjct 9739 GCTTCTTTCTGGACCGCCGAAGAAATCGATTTGAGTAAAGATTTGGATGACTGGAATAAC 9680
Query 268820 ---TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTG-CGTTTTTTGCAGTTAG 268875
|| || | | |||||| ||| | ||| | | | ||| | ||||| || | |
Sbjct 9679 AAATTGAATGAAAATGAAAGATATTTTGTCTCT-AGAGTATTGGCATTTTTCGCTGCTTC 9621
Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935
||||||||| ||| ||||| || | || || |||| || || || |||| ||
Sbjct 9620 TGATGGTATTGTTGGTGAAAACTTAATTGAAAACTTCTCGACTGAAGTTCAACTTCCCGA 9561
Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995
||||| || || ||||| ||||| || || ||||| ||||||||||| | |||
Sbjct 9560 AGCCAAATCATTCTACGGTTTCCAAATCATGATGGAAAACATTCATTCAGAAACCTACTC 9501
Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAG-ACT-ATTTTCTTCT 269053
| ||||||| || ||||| ||| | ||| | | | ||| | ||| |||| | |
Sbjct 9500 TTTATTAATTGAAACTTACATAAAAGAT--CCTCAAGAAGCCGATTACTTATTTAATGCC 9443
Query 269054 ATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT 269113
|| | ||| ||| | ||| ||| |||| |||||| | |||||||| | |||
Sbjct 9442 ATTGCCAATATTCCATGTATTCAAAAGAAAGCTGACTGGGCTATCAAATGGATTCAAGAT 9383
Query 269114 AGCGC-GCCTT--ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170
| ||||| | || ||||| |||||||| ||||| || || |||||||| ||||||
Sbjct 9382 GATGAAGCCTTGTATGGTGAAAGATTAGTTGCCTTTGCTGCAGTTGAAGGTATTTTCTTT 9323
Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230
|| || ||||| ||||||| |||||||| || ||||| | |||||||| || |||
Sbjct 9322 AGTGGTTCATTTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTAATGCCAGGGTTGACT 9263
Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290
||||| ||||| ||||| |||| || |||||||||||| ||||| |||||||||||
Sbjct 9262 TTCTCAAACGAGTTGATTTGCAGAGATGAAGGTTTACACACTGACTTTGCTTGTTTATTG 9203
Query 269291 TTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCA 269350
||| || ||| | | ||| ||| |||| ||| | || | ||||||| | |
Sbjct 9202 TTTGCTCATT---TGCAAAACAGACCATCTCCAGAGATTGTTGAAAAAATTATTACTGAA 9146
Query 269351 GCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTT-ATCGGTAT 269409
|||||| ||| || | ||| | | || || ||||| || | | ||| | |||||
Sbjct 9145 GCTGTTGATGTTGAGAAAGAGTACTTTACCGATGCTCT-TCCAGTGTCCTTGTTGGGTAT 9087
Query 269410 GAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTT 269469
||| | || | |||| |||| ||| | ||||| ||||||||||| || || | ||
Sbjct 9086 GAACTGTAACTTGATGTGTCAATACATTGAATTCGTCGCTGATAGATTGTTGTTGGCCTT 9027
Query 269470 AGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATT 269529
||| | ||| ||| || ||| ||||| ||| ||| ||||| || || || ||
Sbjct 9026 AGGTAACAAGAAAGTATACAATGTTACTAATCCATTTGATTTCATGGAAAACATTTCTTT 8967
Query 269530 AGAAGGTAAGGCTAATTTCTTCGAGAA 269556
| |||||| | |||||||| || ||
Sbjct 8966 GGCTGGTAAGACCAATTTCTTTGAAAA 8940
>seq221
Length=21533
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||||| || | || | || || |||||||| || || || || |||||||||
Sbjct 10192 CCACCTCTTAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 10133
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| ||||||||||||||| | |||||| ||||||||||||| || ||||| || || ||
Sbjct 10132 AAAGTTCTACCGTCTTCCAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 10073
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| |||||||| || ||||| || | || ||||| || | || || || ||| ||
Sbjct 10072 ATACCTTCTTTGTCTTGAATTTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 10013
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| ||||| || |||||||| | || || || || || |||||
Sbjct 10012 TCTAAAGTAATGGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 9966
>seq22
Length=82586
Score = 114 bits (126), Expect = 3e-20
Identities = 309/467 (66%), Gaps = 13/467 (3%)
Strand=Plus/Plus
Query 269129 GAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCT 269188
|| || || ||||| ||||| || || ||||||||||| || || || ||||| ||
Sbjct 9057 GAGAGATTGGTTGCGTTTGCTGCCGTTGAAGGTATATTTTTCAGTGGTTCGTTTGCAGCA 9116
Query 269189 ATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATA 269248
|| || ||||| |||||||| || | ||||||||||| || || || || ||||||||
Sbjct 9117 ATTTTCTGGTTAAAGAAAAGGGGGTTGATGCCAGGATTGACATTTTCGAATGAATTGATT 9176
Query 269249 AGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCA 269308
|| | |||||||| | ||| || | || ||||| ||||| || ||| |
Sbjct 9177 TGCCGAGACGAAGGGATTCACACGGATTATGCCTGTTTGTTATT--CT-CGTATTTAAAG 9233
Query 269309 CACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACA 269368
| |||||||||| ||| | | | |||| || ||||| || | || | |
Sbjct 9234 AATAAACCTTCTCCAGAAATCATTGAGAAAATCATTACCGAGGCTGTGACTATTGAGAAA 9293
Query 269369 GAATTTCTAACGGAAGCTCTATC--TATCGATCTTATCGGTATGAATAGCAAATCGATGA 269426
||| | | | || || || | |||| | | | || |||||| | | | ||||
Sbjct 9294 AAATATTTCAGCGATGCGCTTCCAGTATC--TTTATTGGGAATGAATTGTGACTTGATGT 9351
Query 269427 TAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAAT 269486
| ||| || | || || ||||| |||| | ||| | || || | |||||| |
Sbjct 9352 GCCAGTATGTTGAATTTGTTGCTGATCGATTATTAGTGGCCTTTGG---AAATAAAAAGT 9408
Query 269487 AT---AACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTA 269543
|| || ||| ||||| ||| ||||||||| ||||| ||||| | ||||| |||
Sbjct 9409 ATTACAATGTTACTAATCCATTTGATTTTATGGAAAATATCTCATTGGCTGGTAAAACTA 9468
Query 269544 ATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATG 269590
||||||| || ||| | || | | || || || |||||||||
Sbjct 9469 ATTTCTTTGAAAAGAGAGTTTCTGATTACCAAAAGGCCGGTGTAATG 9515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151386922716824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |