Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq78 219 5e-52 seq377 159 4e-34 seq34 98.7 1e-15 >seq78 Length=41181 Score = 219 bits (242), Expect = 5e-52 Identities = 341/498 (68%), Gaps = 51/498 (10%) Strand=Plus/Minus Query 6808 AATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGA 6867 |||||||| || | || | ||||||||| ||||| | ||| ||||| |||| |||||| Sbjct 31996 AATTGTTCCTTCAAGGCATCTATATGATCCAAATAGACATGTGCATCACCTAAAGTATGA 31937 Query 6868 ATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAA 6927 || ||||| || | |||||| || | || ||||| | | ||||| || || || Sbjct 31936 ATGAATTCGCCACAGTCCATATCCACCACATGTGCAATCATCTTAGTTAACAACGCGTAG 31877 Query 6928 GAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAA 6987 || || | |||||| ||||||||||| |||||||| ||||||||||| || |||| Sbjct 31876 GATGCAATATTAAATGGTACACCTAACCCCATATCACAAGATCTTTGATACAATAAACAA 31817 Query 6988 GATAA------------------------------AATATT---GTCTA---------TA 7005 ||||| | |||| |||| || Sbjct 31816 GATAATTTTGGTTTGGCGGTTTTAGCTTGTTTGGGATTATTTGAGTCTGGTTGAGATGTA 31757 Query 7006 G---------CATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATA 7056 | ||||||||||||| |||||||||||||||||||| | | | | | | Sbjct 31756 GGGAAGTTCACATAAAATTGACAAAATACATGACATGGAGGTAATGCCATTTTAGCAAAA 31697 Query 7057 TCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTT 7116 || | |||||||||||||| ||| | ||| | |||||||| ||||||||||| |||||| Sbjct 31696 TCTGGTGGATTCCAAGCAGACATGATAATTCTTCTATCATAAGGATTTGTTTTCAATTTT 31637 Query 7117 GTTATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATA 7176 | |||| |||||| ||||| | || || || ||||| || || ||||| | || Sbjct 31636 TTAATAACATCTTGTAACTGATCAAATCCTTGGCCACTATAATCAGAATCACAATCTTTA 31577 Query 7177 TAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCA 7236 || | || ||||||||||||||||| || ||||||| || || ||||| ||||| | Sbjct 31576 TATTCTGCACCAAAATGTCTCCATTGGAAACCATAAACTGGTCCCAAATCCCCTTCACGA 31517 Query 7237 CGATGATTAAATCCTAAT 7254 |||||| | ||||||||| Sbjct 31516 CGATGAGTCAATCCTAAT 31499 >seq377 Length=10469 Score = 159 bits (176), Expect = 4e-34 Identities = 321/475 (68%), Gaps = 21/475 (4%) Strand=Plus/Minus Query 164495 AAAAATTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTA 164554 ||||||||| | ||||||| ||||| | |||||| ||||||||| ||| |||| Sbjct 8228 AAAAATTAGATTATAAACATTGTAAAGGTTTATTATTATTTGGACCTCCAGGTACTGGTA 8169 Query 164555 AAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTG 164611 |||| || || ||||| | ||| || | | ||| | || || ||||||| Sbjct 8168 AAACTTTGATTGCTCG-TAAATTATCGAAAATGCTTAATGGTAAAGAACCA--AAAATTG 8112 Query 164612 TTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGT 164671 | |||||||| ||| | |||| |||||||| |||| || |||| ||| || | || | Sbjct 8111 TCAATGGTCCAGAAATGTTGAGTAAATATGTTGGTGCATCTGAAGAAAATATTCGTAATT 8052 Query 164672 TGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTA 164731 | ||| | || ||||||| |||| | || | |||| || | | |||||||||| Sbjct 8051 TATTTAAAGATGCTGAAGCAGAATATAAATTAAAAGGTGAAGATTCAGATTTACATGTTA 7992 Query 164732 TTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTG-------ATAATAT---- 164780 || | |||||||| | ||| || ||| |||| || | || || | || Sbjct 7991 TTATATTTGATGAATTGGATTCTGTTTTCAAACAAAGAGGATCAGGGAAATCAGATGGCA 7932 Query 164781 ----TATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCT 164836 | || |||| || || ||||| || | || ||||| ||||| || || | Sbjct 7931 CTGGTGTTGGTGATAATGTTGTCAATCAATTATTATCGAAAATGGATGGGGTTGACCAAT 7872 Query 164837 TAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTAT 164896 | ||||||||||| || | |||||||| || || ||||| |||||| |||||||| Sbjct 7871 TGAATAATATTTTGGTTATTGGTATGACAAATCGTTTAGATTTGATTGATACTGCTTTAT 7812 Query 164897 TACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGG 164951 || |||| ||| |||| ||| | |||| |||||| ||||| || || |||| Sbjct 7811 TAAGACCAGGTAGATTTGAAATTCAAATTGAAATATCTTTACCTGATGAAAAAGG 7757 >seq34 Length=64929 Score = 98.7 bits (108), Expect = 1e-15 Identities = 130/179 (73%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 19330 TAAAATTAA-ATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTA 19388 ||||| ||| | | ||| | ||||| | || |||| || ||||||||||| || Sbjct 25169 TAAAAGTAAGAATGAGAACAACTAAAGTTCCACAAATTGGGGATAAGTTTGCCTCGAGAC 25228 Query 19389 CTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAG 19448 | ||||||||| || |||| ||| ||| | || ||||||||||||||||| | Sbjct 25229 ACGGTCAAAAAGGTACTATTGGTGTGACATATAGACATGAAGATATGCCTTTTACAGCCG 25288 Query 19449 ATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507 | ||||| || || ||| | ||||| ||||| |||||| ||||| ||| |||||| || Sbjct 25289 AAGGTATTGTTCCAGATTTAATTATCAACCCTCATGCTATTCCATCTCGTATGACGGTT 25347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595866205144800