Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23]
778 sequences; 14,044,856 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq78 219 5e-52
seq377 159 4e-34
seq34 98.7 1e-15
>seq78
Length=41181
Score = 219 bits (242), Expect = 5e-52
Identities = 341/498 (68%), Gaps = 51/498 (10%)
Strand=Plus/Minus
Query 6808 AATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGA 6867
|||||||| || | || | ||||||||| ||||| | ||| ||||| |||| ||||||
Sbjct 31996 AATTGTTCCTTCAAGGCATCTATATGATCCAAATAGACATGTGCATCACCTAAAGTATGA 31937
Query 6868 ATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAA 6927
|| ||||| || | |||||| || | || ||||| | | ||||| || || ||
Sbjct 31936 ATGAATTCGCCACAGTCCATATCCACCACATGTGCAATCATCTTAGTTAACAACGCGTAG 31877
Query 6928 GAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAA 6987
|| || | |||||| ||||||||||| |||||||| ||||||||||| || ||||
Sbjct 31876 GATGCAATATTAAATGGTACACCTAACCCCATATCACAAGATCTTTGATACAATAAACAA 31817
Query 6988 GATAA------------------------------AATATT---GTCTA---------TA 7005
||||| | |||| |||| ||
Sbjct 31816 GATAATTTTGGTTTGGCGGTTTTAGCTTGTTTGGGATTATTTGAGTCTGGTTGAGATGTA 31757
Query 7006 G---------CATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATA 7056
| ||||||||||||| |||||||||||||||||||| | | | | | |
Sbjct 31756 GGGAAGTTCACATAAAATTGACAAAATACATGACATGGAGGTAATGCCATTTTAGCAAAA 31697
Query 7057 TCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTT 7116
|| | |||||||||||||| ||| | ||| | |||||||| ||||||||||| ||||||
Sbjct 31696 TCTGGTGGATTCCAAGCAGACATGATAATTCTTCTATCATAAGGATTTGTTTTCAATTTT 31637
Query 7117 GTTATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATA 7176
| |||| |||||| ||||| | || || || ||||| || || ||||| | ||
Sbjct 31636 TTAATAACATCTTGTAACTGATCAAATCCTTGGCCACTATAATCAGAATCACAATCTTTA 31577
Query 7177 TAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCA 7236
|| | || ||||||||||||||||| || ||||||| || || ||||| ||||| |
Sbjct 31576 TATTCTGCACCAAAATGTCTCCATTGGAAACCATAAACTGGTCCCAAATCCCCTTCACGA 31517
Query 7237 CGATGATTAAATCCTAAT 7254
|||||| | |||||||||
Sbjct 31516 CGATGAGTCAATCCTAAT 31499
>seq377
Length=10469
Score = 159 bits (176), Expect = 4e-34
Identities = 321/475 (68%), Gaps = 21/475 (4%)
Strand=Plus/Minus
Query 164495 AAAAATTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTA 164554
||||||||| | ||||||| ||||| | |||||| ||||||||| ||| ||||
Sbjct 8228 AAAAATTAGATTATAAACATTGTAAAGGTTTATTATTATTTGGACCTCCAGGTACTGGTA 8169
Query 164555 AAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTG 164611
|||| || || ||||| | ||| || | | ||| | || || |||||||
Sbjct 8168 AAACTTTGATTGCTCG-TAAATTATCGAAAATGCTTAATGGTAAAGAACCA--AAAATTG 8112
Query 164612 TTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGT 164671
| |||||||| ||| | |||| |||||||| |||| || |||| ||| || | || |
Sbjct 8111 TCAATGGTCCAGAAATGTTGAGTAAATATGTTGGTGCATCTGAAGAAAATATTCGTAATT 8052
Query 164672 TGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTA 164731
| ||| | || ||||||| |||| | || | |||| || | | ||||||||||
Sbjct 8051 TATTTAAAGATGCTGAAGCAGAATATAAATTAAAAGGTGAAGATTCAGATTTACATGTTA 7992
Query 164732 TTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTG-------ATAATAT---- 164780
|| | |||||||| | ||| || ||| |||| || | || || | ||
Sbjct 7991 TTATATTTGATGAATTGGATTCTGTTTTCAAACAAAGAGGATCAGGGAAATCAGATGGCA 7932
Query 164781 ----TATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCT 164836
| || |||| || || ||||| || | || ||||| ||||| || || |
Sbjct 7931 CTGGTGTTGGTGATAATGTTGTCAATCAATTATTATCGAAAATGGATGGGGTTGACCAAT 7872
Query 164837 TAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTAT 164896
| ||||||||||| || | |||||||| || || ||||| |||||| ||||||||
Sbjct 7871 TGAATAATATTTTGGTTATTGGTATGACAAATCGTTTAGATTTGATTGATACTGCTTTAT 7812
Query 164897 TACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGG 164951
|| |||| ||| |||| ||| | |||| |||||| ||||| || || ||||
Sbjct 7811 TAAGACCAGGTAGATTTGAAATTCAAATTGAAATATCTTTACCTGATGAAAAAGG 7757
>seq34
Length=64929
Score = 98.7 bits (108), Expect = 1e-15
Identities = 130/179 (73%), Gaps = 1/179 (1%)
Strand=Plus/Plus
Query 19330 TAAAATTAA-ATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTA 19388
||||| ||| | | ||| | ||||| | || |||| || ||||||||||| ||
Sbjct 25169 TAAAAGTAAGAATGAGAACAACTAAAGTTCCACAAATTGGGGATAAGTTTGCCTCGAGAC 25228
Query 19389 CTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAG 19448
| ||||||||| || |||| ||| ||| | || ||||||||||||||||| |
Sbjct 25229 ACGGTCAAAAAGGTACTATTGGTGTGACATATAGACATGAAGATATGCCTTTTACAGCCG 25288
Query 19449 ATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507
| ||||| || || ||| | ||||| ||||| |||||| ||||| ||| |||||| ||
Sbjct 25289 AAGGTATTGTTCCAGATTTAATTATCAACCCTCATGCTATTCCATCTCGTATGACGGTT 25347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595866205144800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |