Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23]
778 sequences; 14,044,856 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq241 250 3e-61
seq22 172 6e-38
>seq241
Length=19529
Score = 250 bits (276), Expect = 3e-61
Identities = 649/989 (66%), Gaps = 26/989 (3%)
Strand=Plus/Plus
Query 21120 TATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCttt---------ttttG 21170
|||| |||| ||||| |||| || | |||| ||| | ||||||| ||| |
Sbjct 8845 TATTGTTTTAGAAATCTTCATCAAAGGTGAAAGCATCAGCTTCTTTGTTCTCTGTTTTGG 8904
Query 21171 ACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTT 21230
||||| || |||||| || || |||||||||||| || ||||| ||||| ||
Sbjct 8905 CCATAACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAG 8964
Query 21231 CCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAAC 21290
|||| || || |||||| |||||||||||||| | || ||| ||| || ||
Sbjct 8965 CCAAAGAAATGTTTTCCATGAAATCAAATGGATTAGTAACATTGTATACTTTCTTGTTAC 9024
Query 21291 CCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAAT 21350
| | | | || |||||||| || || ||||| || ||||||||||| || | ||| |
Sbjct 9025 CTAAGGCCAACAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGT 9084
Query 21351 TCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGG 21410
||||||| | ||| || |||||||| | || || | ||| || | | || |
Sbjct 9085 TCATACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAG 9144
Query 21411 CTTCAACAATTATATTT---ATTATC-CT--AGATGTACTAGGGGGATACAATAATTGTT 21464
||||| ||| || ||| | ||| || ||||| || | | ||| ||
Sbjct 9145 CTTCAGTAATAATTTTTTCAACAATCTCTGGAGATGGTCT---GTTTTGCAAA---TGAG 9198
Query 21465 TAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAG 21524
||||| ||||| ||||| ||| || ||||||||||| || | || || || || |
Sbjct 9199 CAAACAATAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTG 9258
Query 21525 AAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTC 21584
| || || || || |||||||| ||||||||||| ||||| || || || ||||||| |
Sbjct 9259 AGAAAGTCAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAAC 9318
Query 21585 CTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATT 21644
| ||||||||| || ||||| |||||||| |||||||||| |||||| || | ||
Sbjct 9319 CACTAAAGAAAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTT 9378
Query 21645 CTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTAT 21704
| | ||| |||||||| ||||| | || || | || |||||| ||| |
Sbjct 9379 CATCATCTTGAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGG 9438
Query 21705 CAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNN 21764
|||| || || || | | || ||| | ||| |||||
Sbjct 9439 CAATGGCATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATA 9498
Query 21765 NACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTG 21824
| || |||| ||||| || ||||| ||| || || || ||||| || || | |
Sbjct 9499 AAGAGTAGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGG 9558
Query 21825 CCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCAT 21884
| || | | |||||| || | | || || | ||||||||| || || ||||
Sbjct 9559 CTTCGGGAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCAT 9618
Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT- 21943
|| || || ||||||||||||| | | |||||||| ||| || || | |||
Sbjct 9619 CAGAAGCAGCGAAAAATGCCAATACTCTAGAGACAAAATATCTTTCATTTTCATTCAATT 9678
Query 21944 --TTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAG 22001
|| ||||| || |||||||| ||||| | |||||| | ||||| || ||
Sbjct 9679 TGTTATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAG 9738
Query 22002 CAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACC 22061
| ||| || ||||| | |||| || |||| ||| | ||||| || || ||| | |
Sbjct 9739 CTTCAGCTTTCTTATAAAAGTTCCAAATTTCATGGTATCTGATTGGGAACATCACATAAC 9798
Query 22062 TGTTATTTG-ATTCAACTAAAAGTGGTTC 22089
| |||| |||||| || | ||||||
Sbjct 9799 -GACGTTTGTTTTCAACCAATAATGGTTC 9826
>seq22
Length=82586
Score = 172 bits (190), Expect = 6e-38
Identities = 308/445 (69%), Gaps = 6/445 (1%)
Strand=Plus/Minus
Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244
||||| |||||| |||||| ||||| || ||||| || || || ||||||| ||| |
Sbjct 9502 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAATGAGATATTT 9443
Query 21245 TCCATAAAATCAAATGGATT-TTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303
|||||||||||||||||||| | | ||| |||| ||| ||| || | | |||
Sbjct 9442 TCCATAAAATCAAATGGATTAGTAACATTGTAATACTTT-TTATTTCCAAAGGCCACTAA 9384
Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363
||||| ||| || |||||||| | ||| || ||||| || ||||||||||| || | ||
Sbjct 9383 TAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATAA 9324
Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423
||| ||||| || | | ||| | ||| || |||| || || || ||| ||
Sbjct 9323 AGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGAT 9264
Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483
|| || | || | ||| || | ||| | || | |||||| ||| |
Sbjct 9263 TTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGGCATA 9204
Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543
||| || | ||||| || | | || |||||||| |||||||| || || |||||
Sbjct 9203 ATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTGGCAT 9144
Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATG--CTCCTGAAAAGAAAATGCCC 21601
|| || || || |||||||| || |||| ||||| | | |||||| || || ||
Sbjct 9143 CAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAA--AATATACCT 9086
Query 21602 TCAACGGCAGCAAATGCAACTAATC 21626
|||||||||||||| ||||| ||||
Sbjct 9085 TCAACGGCAGCAAACGCAACCAATC 9061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531895627264720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |