Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq241 250 3e-61 seq22 172 6e-38 >seq241 Length=19529 Score = 250 bits (276), Expect = 3e-61 Identities = 649/989 (66%), Gaps = 26/989 (3%) Strand=Plus/Plus Query 21120 TATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCttt---------ttttG 21170 |||| |||| ||||| |||| || | |||| ||| | ||||||| ||| | Sbjct 8845 TATTGTTTTAGAAATCTTCATCAAAGGTGAAAGCATCAGCTTCTTTGTTCTCTGTTTTGG 8904 Query 21171 ACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTT 21230 ||||| || |||||| || || |||||||||||| || ||||| ||||| || Sbjct 8905 CCATAACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAG 8964 Query 21231 CCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAAC 21290 |||| || || |||||| |||||||||||||| | || ||| ||| || || Sbjct 8965 CCAAAGAAATGTTTTCCATGAAATCAAATGGATTAGTAACATTGTATACTTTCTTGTTAC 9024 Query 21291 CCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAAT 21350 | | | | || |||||||| || || ||||| || ||||||||||| || | ||| | Sbjct 9025 CTAAGGCCAACAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGT 9084 Query 21351 TCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGG 21410 ||||||| | ||| || |||||||| | || || | ||| || | | || | Sbjct 9085 TCATACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAG 9144 Query 21411 CTTCAACAATTATATTT---ATTATC-CT--AGATGTACTAGGGGGATACAATAATTGTT 21464 ||||| ||| || ||| | ||| || ||||| || | | ||| || Sbjct 9145 CTTCAGTAATAATTTTTTCAACAATCTCTGGAGATGGTCT---GTTTTGCAAA---TGAG 9198 Query 21465 TAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAG 21524 ||||| ||||| ||||| ||| || ||||||||||| || | || || || || | Sbjct 9199 CAAACAATAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTG 9258 Query 21525 AAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTC 21584 | || || || || |||||||| ||||||||||| ||||| || || || ||||||| | Sbjct 9259 AGAAAGTCAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAAC 9318 Query 21585 CTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATT 21644 | ||||||||| || ||||| |||||||| |||||||||| |||||| || | || Sbjct 9319 CACTAAAGAAAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTT 9378 Query 21645 CTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTAT 21704 | | ||| |||||||| ||||| | || || | || |||||| ||| | Sbjct 9379 CATCATCTTGAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGG 9438 Query 21705 CAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNN 21764 |||| || || || | | || ||| | ||| ||||| Sbjct 9439 CAATGGCATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATA 9498 Query 21765 NACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTG 21824 | || |||| ||||| || ||||| ||| || || || ||||| || || | | Sbjct 9499 AAGAGTAGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGG 9558 Query 21825 CCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCAT 21884 | || | | |||||| || | | || || | ||||||||| || || |||| Sbjct 9559 CTTCGGGAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCAT 9618 Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT- 21943 || || || ||||||||||||| | | |||||||| ||| || || | ||| Sbjct 9619 CAGAAGCAGCGAAAAATGCCAATACTCTAGAGACAAAATATCTTTCATTTTCATTCAATT 9678 Query 21944 --TTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAG 22001 || ||||| || |||||||| ||||| | |||||| | ||||| || || Sbjct 9679 TGTTATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAG 9738 Query 22002 CAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACC 22061 | ||| || ||||| | |||| || |||| ||| | ||||| || || ||| | | Sbjct 9739 CTTCAGCTTTCTTATAAAAGTTCCAAATTTCATGGTATCTGATTGGGAACATCACATAAC 9798 Query 22062 TGTTATTTG-ATTCAACTAAAAGTGGTTC 22089 | |||| |||||| || | |||||| Sbjct 9799 -GACGTTTGTTTTCAACCAATAATGGTTC 9826 >seq22 Length=82586 Score = 172 bits (190), Expect = 6e-38 Identities = 308/445 (69%), Gaps = 6/445 (1%) Strand=Plus/Minus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 ||||| |||||| |||||| ||||| || ||||| || || || ||||||| ||| | Sbjct 9502 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAATGAGATATTT 9443 Query 21245 TCCATAAAATCAAATGGATT-TTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 |||||||||||||||||||| | | ||| |||| ||| ||| || | | ||| Sbjct 9442 TCCATAAAATCAAATGGATTAGTAACATTGTAATACTTT-TTATTTCCAAAGGCCACTAA 9384 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 ||||| ||| || |||||||| | ||| || ||||| || ||||||||||| || | || Sbjct 9383 TAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATAA 9324 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 ||| ||||| || | | ||| | ||| || |||| || || || ||| || Sbjct 9323 AGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGAT 9264 Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483 || || | || | ||| || | ||| | || | |||||| ||| | Sbjct 9263 TTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGGCATA 9204 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 ||| || | ||||| || | | || |||||||| |||||||| || || ||||| Sbjct 9203 ATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTGGCAT 9144 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATG--CTCCTGAAAAGAAAATGCCC 21601 || || || || |||||||| || |||| ||||| | | |||||| || || || Sbjct 9143 CAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAA--AATATACCT 9086 Query 21602 TCAACGGCAGCAAATGCAACTAATC 21626 |||||||||||||| ||||| |||| Sbjct 9085 TCAACGGCAGCAAACGCAACCAATC 9061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531895627264720