Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq241 262 4e-65 seq22 154 2e-32 >seq241 Length=19529 Score = 262 bits (290), Expect = 4e-65 Identities = 611/910 (67%), Gaps = 35/910 (4%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| ||||||||| || |||| |||||||||||||||| ||||| || | Sbjct 8906 CATAACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGC 8965 Query 92850 CAAAGATATCGAATTCACT---AGTGATTGGATTCTTGGCGTTATAATACTTT----TCA 92902 |||||| || | ||| | | | |||||| | | || || |||||| | | Sbjct 8966 CAAAGAAAT-GTTTTCCATGAAATCAAATGGATTAGTAACATTGTA-TACTTTCTTGTTA 9023 Query 92903 CCGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCA 92962 || | | | |||| ||||||||||| || ||||| ||||| ||| ||||||| | | Sbjct 9024 CCTA---AGGCCAACAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTA 9080 Query 92963 CAATTCATTCCTAGAA--GACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTA 93020 || ||||| || | | ||| || || ||||| ||||| ||| | |||||||| | Sbjct 9081 CAGTTCATACCCAACAAGGAC--ACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACAT 9138 Query 93021 CAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGG---TGGTTTTTGTACGACAT 93077 |||| ||||| | | |||| | || | | | ||| |||| | | | | || Sbjct 9139 CAACAGCTTCAGTAATAATTTTTTCAAC---AATCTCTGGAGATGGTCTGTTTTGCAAAT 9195 Query 93078 AATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCAT 93137 | ||| ||| || |||||||| || ||||||||||| |||| | |||||||| | Sbjct 9196 GAGCAAACAATAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGT 9255 Query 93138 TGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAAC 93197 | ||| || || ||||| | | |||| || || | ||| || || |||||||| Sbjct 9256 TTGAGAAAGTCAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATG 9315 Query 93198 TACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG 93257 |||| ||| || |||||||| || || ||||| || || | | ||| || | | Sbjct 9316 AACCACTAAAGAAAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGG 9375 Query 93258 CGGAATTACTGCTG-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 | || | | || |||||||| | |||||| || ||||| || | |||||| || | Sbjct 9376 CTTCATCA-TCTTGAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATA 9434 Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 | | || || ||||||| |||||| || | | |||| |||||| || || ||| Sbjct 9435 TTGGCAATGGCATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATT 9494 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 || | ||| || |||| ||||| | || ||||| |||||||| |||||||| || Sbjct 9495 AATAAAGAGTAGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGAT 9554 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | ||||| | | || ||||| || || | || | | |||||| || ||| Sbjct 9555 TTGGCTTCGGGAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATA 9614 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTT----ATAAAATGTTTCTCATCATC 93552 ||||| || || || ||||| ||||||| || | | ||||| | | |||| || Sbjct 9615 CCATCAGAAGCAGCGAAAAATGCCAATA----CTCTAGAGACAAAATATCTTTCATTTTC 9670 Query 93553 TTTAA---GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCA 93609 || | |||| ||| || | |||||| | ||||| ||||||| | ||||| Sbjct 9671 ATTCAATTTGTTATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCA 9730 Query 93610 AAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 || || ||||| ||||| || || | | ||| || || || ||| ||||| || || Sbjct 9731 GAAAGAAGCTTCAGCTTTCTTATAAAAGTTCCAAATTTCATGGTATCTGATTGGGAACAT 9790 Query 93670 GACAAAACGA 93679 ||| ||||| Sbjct 9791 CACATAACGA 9800 >seq22 Length=82586 Score = 154 bits (170), Expect = 2e-32 Identities = 578/898 (64%), Gaps = 29/898 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| ||||| |||||||| || |||| | |||||||||||||| || || || | Sbjct 9515 CATTACACCGGCCTTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGC 9456 Query 92850 CAA--AGATATCGAATTCACTAGTG---ATTGGATTCTTGGCGTTATAATACTTTTCACC 92904 ||| |||||| ||| || | |||||| | | || |||||||||| | Sbjct 9455 CAATGAGATATT---TTCCATAAAATCAAATGGATTAGTAACATTGTAATACTTTTTATT 9399 Query 92905 GATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACA 92964 || | ||||||| |||||| |||||||| | ||||| ||||||| ||||| Sbjct 9398 TCCAAAGGCCACTAATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACA 9339 Query 92965 ATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024 ||||||||| | | | ||| || || || ||| | || | | |||||| || || Sbjct 9338 ATTCATTCCCAATAAAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCAC 9279 Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTT-----GGTGGTTTTTGTACGACATAA 93079 || || | | ||||| ||| | |||| | ||||| | | ||| Sbjct 9278 AGCCTCGGTAATGATTTT-----CTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATAC 9224 Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 | | | || || ||| | || || || | ||||||||||| | ||||| ||||| Sbjct 9223 GAGAATAACAAACAGGCATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTC 9164 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||||| || ||||| | || || | |||||| | ||| || |||| ||||| | Sbjct 9163 GAAAATGTCAATCCTGGCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAA 9104 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||| |||||||||||||| ||||| ||||| || || | | || ||| | || Sbjct 9103 CCACTGAAAAATATACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGC- 9045 Query 93260 GAAT--TACTGCTG-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 || | | || ||||| | | |||||||||||||||| | || | || | Sbjct 9044 --ATCCTCGTCTTGAATCCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATA 8987 Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGC-TCGTCCGAATCTCGTATGTATGTATCGAT 93375 |||| ||||| ||||| | | || ||| || || | || | |||||| ||||| Sbjct 8986 TTTTCAATAGCATTAAACAAAAAGTC-CGCTTCTTCTGGGTCCTTGAAGTATGTTTCGAT 8928 Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 ||||| ||||| | || ||||||| || ||||| || || || ||| | Sbjct 8927 TAACAACGAATAAGTCTCTGAATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAG 8868 Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495 | ||| || | || || ||||| | | || | || || | || |||||||| || Sbjct 8867 TTGAGCCTCTGGTATTTGTACTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAAT 8808 Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555 |||||| || || ||||| || ||||| | | || ||| | | |||| || || Sbjct 8807 ACCATCCGAGGCAGCAAAGAATGCCAACACTCGGGAGATGAAAAATCTTTCATTTTCGTT 8748 Query 93556 AAGCTTA---TCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAA 93612 | ||| | ||| |||| | |||||| | || | ||||| | |||||||| Sbjct 8747 CATTTTATTGTTCCAGTCGGCCAAATCTTTACTTAAGTCAAGCTCTTCAGCTGTCCAAAA 8688 Query 93613 CGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 ||| || | |||||||| | | ||||| || |||| | ||| ||| ||||| Sbjct 8687 CGAGGCCAACGACTTTTTGTAGAATTGCCATAACTCCGGATACTTAATAGGATATATG 8630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556855384528720