Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq65 141 1e-28 seq30 120 4e-22 seq240 82.4 9e-11 >seq65 Length=45114 Score = 141 bits (156), Expect = 1e-28 Identities = 884/1399 (63%), Gaps = 49/1399 (4%) Strand=Plus/Minus Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 |||||||| || || ||||||||||||||||| ||||| | || || || || ||||| Sbjct 20051 GTGTATGGTTCGAAACACTCATTGTTACCCAAAATTTGTGATGTAGAAGCAGTAGGCATT 19992 Query 114014 GGTGCCA-TGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGAGGGCG 114070 || || | | | |||| ||| | | ||| | || || ||| || || | | Sbjct 19991 GGAGCAACTAATAAGGA-GTTTCTCATACCATGCTTAGCCAAATT--TTGTTTTAATGTA 19935 Query 114071 TCCCAGTCG--TAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 114128 ||||| || || || || ||| | | | ||| | ||||||||| | | ||||| Sbjct 19934 TCCCAATCCCATAATTCAG--TTGGTTTTCTGTTCCATAAATCAAACTGTAATAAACCTT 19877 Query 114129 GGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTC----G 114184 | ||||| || || || | | || ||||| | || || | | |||||||| | Sbjct 19876 GAGAGGCAGGGGAGCCTGGATAAGTTTCGTAGGCACCTTCTTCTTTAGCCAATTCAACAG 19817 Query 114185 GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 114244 |||| || | || || || || || ||||| ||||| || || | | | || Sbjct 19816 AAGCT----TCAACAGCAGCATGGTAAATAGTCTCGAAAATTTGAATGTTTAATTCTCTG 19761 Query 114245 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 114304 || || | ||| ||||| | | || | ||||| |||| || | |||||| ||| Sbjct 19760 GCTTCTTGGGAGTCAAATGGTAATCTCAATTCCATAAAGGCATCAGCCAAACCTTGAACA 19701 Query 114305 CCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCTCCA-CGGGATAAA 114362 || | ||||||| | ||||||||||| || |||||| || ||| | | || ||| Sbjct 19700 CCCAAAGCAATTGGTCTGTGTCTCATATTTGATCTTTCG-GCT-TCTGGAACTGGGTAAT 19643 Query 114363 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 114422 || | || ||||| || || | || |||||| ||||| |||| ||||| | || Sbjct 19642 GGTTGCGGTCAATAACTCTGTTCAAGTTACGGGTGACTACCTTGGTGACATCATGTAACT 19583 Query 114423 TTTCGTAATCAAAACTG---CGAGTCTCTTCATTGA---CAT---ACTTAGGAAGG---- 114469 | |||||| || | ||| | | | |||| | | || | || || Sbjct 19582 T------ATCAAAGTTGTACCAAGTAT-TACTTTGATCGCTTTCAACAAATGATGGTAAA 19530 Query 114470 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 114529 || || || |||| ||||| |||| | ||||| | ||| || || | |||||| Sbjct 19529 GCAATGGAGGCCAAGTTACAAACAGCGACTTCATCTGGAGCAGAATATTCAACAATTTCA 19470 Query 114530 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 114589 ||| || || ||| ||||| | |||||||||||||| || || || ||||||| Sbjct 19469 CAACATAAGTTGGAAGATTTAATAATACCCAAGTTCTTTTGGTTGGATTTGTTGTTACAT 19410 Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 114649 | ||| ||||| | ||| |||| || ||||| || ||||||| | ||||| | | Sbjct 19409 GAATCTTTGTACAACATAAATGGAGTACCCGTTTCTGTTTGGGCTCCCAAGATAGCGTAC 19350 Query 114650 CAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 114709 || | | ||| | || || | || || | ||||| | || || Sbjct 19349 CACAATTTTTGGGCCTTGATGGTCTGTCTGCCACGGTTTTCTTTTTCGTATCTGGTATAT 19290 Query 114710 AGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAG 114769 | |||| || || ||||| | || | | ||||| |||| || ||| |||| Sbjct 19289 AATTCTTCGAATTCGTCACCGTAAACATCAGCCAAACCTGGGGCCTCATTTGGTGAGAAC 19230 Query 114770 AGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCT 114829 | || ||| | ||| | || || | |||||||| | |||||| ||||| | |||| Sbjct 19229 AAAGTCCAATCACCGTTTTGTTCGACTCTTTTCATGAACAAGTCTGGAATCCATAAAGCT 19170 Query 114830 GAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 114888 | ||| | ||| | | | || |||||| | || ||||| | | || | || Sbjct 19169 GGGAACAAATCTCTGGCTCTGA-TTTCTTCTTTACCATGATTCTTTCTGATGTCAATGAA 19111 Query 114889 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCTTACGAC 114944 || | ||| || |||||| ||||| | ||||| || | | ||| ||| | Sbjct 19110 ATCAAAGATGTCACTGTGCCATGGTTCTAAGTACAAGGCAAAGGCACCAGGTCTTTTG-T 19052 Query 114945 GACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004 |||| | || | ||||| | || ||| ||| || || | | ||||||||| |||| Sbjct 19051 TACCACCTTGATCAACATAACGTGCAGTGTTATTGAACACTCTTACCATTGGAATAATAC 18992 Query 115005 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGT 115064 ||| ||| ||||| || || ||| || | | | | | | ||||| | Sbjct 18991 CATTAGAAGTACCATTGGTACCAGCAATGTAAGCACCAGTAGAACGAATGTTGTGGATAT 18932 Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124 | | |||||| || ||||| | ||||| || || ||| | | | | | || | Sbjct 18931 GTAAACCAATCCCTCCTGCACTTTTTGAAATCAAAGCACACGATTTTAAAGTATCATATA 18872 Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTG 115184 | || || || || ||| |||| | || | | |||||| |||||||| || |||| Sbjct 18871 TACCTTCAATAGAATCATCCTTCATAGCAAGCAAGAAGCATGAAGACATTTGCGGTCTTG 18812 Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTAT 115244 |||||||||| ||||| | | || | | ||| | || | | ||| |||||| | Sbjct 18811 GTGTACCAGCATTGAACAAGCAAGGAGAACCATGGGTAAAGAATCTTTGAGACATCAAGT 18752 Query 115245 CGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAA 115304 ||||| || | ||| || || || | ||||| ||||| | | ||| | ||| | Sbjct 18751 TATAGGTTTCAATGACTCTTGGTATATCATTACCGTGGATACCAACAGCGACTCTCATGA 18692 Query 115305 ACATGTATTGGGGTGTTTC 115323 || | ||||||| |||| Sbjct 18691 TCAAATGTTGGGGTCTTTC 18673 >seq30 Length=68702 Score = 120 bits (132), Expect = 4e-22 Identities = 354/540 (66%), Gaps = 12/540 (2%) Strand=Plus/Minus Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 ||||||||||||||| | || || | || || ||||| |||| ||||| || ||||| Sbjct 2121 CCACATATCAAACTGTAATATCCCATTTGATGCCGGCGAGCCCTGGAATGTTTCATATGG 2062 Query 114163 GCCCTCAACCTCCGCCAATTCGGAGCTC--GCCTCGAGGGCTGCGTGATACATTGTCTCA 114220 |||||| | |||||||| | || ||||| || || || || || || || ||| Sbjct 2061 GCCCTCTTTCATTGCCAATTC--AACTGAGGCCTCAAGTGCAGCATGGTATATAGTTTCA 2004 Query 114221 AAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATA 114280 || || || ||| | || || ||| | |||||||| | | ||| | | | Sbjct 2003 AATATCTGAATATTTAATGTTTTAGCCATTGCAGAATCAAAAGGTAATCGAAGCTCAGCA 1944 Query 114281 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTT 114340 || | ||| || | ||||| ||||| | ||||||| || |||||| |||| || | | Sbjct 1943 AACAAATCTGCCAAGCCTTGTACACCCAAAGCAATTGGACGGTGTCTCTTATTTGAATAT 1884 Query 114341 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 114400 || || | || ||||| | ||| || || | || | ||| | || | Sbjct 1883 TCTGCCGTTTTAACAGGATATTTTGTTACATCAATCACTTTGTTCAAATTCCTTGTCAAG 1824 Query 114401 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA---ACTGCGAGTCTCTTCA---TTG 114454 || || |||| || | ||||| ||||||| | || | |||| || Sbjct 1823 ACTTTGGTGACAGAGTGCAATTTTTCAAAATCAAATGCAATGGCATCCTCTGTGGTTTTC 1764 Query 114455 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA-GT 114513 | ||| |||| | || | ||||| | ||| ||||||| || || || | | | | Sbjct 1763 AAATATGTAGGCAATGCAAGAGACGCTAAATTGCACACAGCAGTTTCTTC-TGGTGATGA 1705 Query 114514 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 114573 || || | |||||| ||||||||||||| ||| || || || | ||| ||||| || Sbjct 1704 ATATTCAACAATTTCGCAACACAAATTTGAAGACTTTATTGTCCCGATGTTTTTTTGGTT 1645 Query 114574 TGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 114633 ||| ||||||||||| || || ||||| ||||| || || || || || ||||| || Sbjct 1644 TGATTTTGTGTTACAGGCGTCTTTGTATAGCATATAAGGACCACCTGTTTCAGTTTGAGA 1585 >seq240 Length=19657 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/202 (69%), Gaps = 7/202 (3%) Strand=Plus/Plus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 ||||| |||||||| || ||| | |||||| | ||| ||| ||||||||||| || Sbjct 8572 TCAAACCCATCCATTTCTACCAACAATTGATTCAATGTTGTTTCACGTTCATCATTGGCA 8631 Query 10934 -----GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAA 10988 ||||| || | | | ||||| ||||| | || || |||||||| | || | Sbjct 8632 CCAGTGGCATTCCCCTTGGAA--CGTTGTTTACCAATAGCATCGATTTCATCAACAAACA 8689 Query 10989 CGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGA 11048 | || | || ||||||||| ||| | ||| | ||| || ||||| || || | Sbjct 8690 CAATCGAAGGGGCATTTTCACGTGCAGTCTTAAATAAATCACGAACTCTAGATGCTCCAA 8749 Query 11049 CACCCACAAACATTTCCACAAA 11070 |||| ||||||||||| ||||| Sbjct 8750 CACCAACAAACATTTCTACAAA 8771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597347790736240