Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq65 199 5e-46 seq6 89.7 6e-13 >seq65 Length=45114 Score = 199 bits (220), Expect = 5e-46 Identities = 1058/1662 (64%), Gaps = 51/1662 (3%) Strand=Plus/Minus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566 || ||||| ||||| || ||| | | | |||||| ||||||||||| ||| |||||| Sbjct 20309 GATTGAGATTGATCAATAAATGCAGCTCTATCAGCAGCCATGTCGATAATATGCTTTTGT 20250 Query 109567 CTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTT 109626 ||||||||||||||||||||||| ||| || ||||| ||||||| | | Sbjct 20249 GAGATTTCCCAGACAGTCTTGTACAATGCCTTAATTTCATCAGGAATGTTTGGCAAAGCT 20190 Query 109627 TGAATAGAGCCACCAGCCTTCACCATGAGA-TCC--TTCATCTCTTTCGACCAGAGACCG 109683 |||||||| ||| || | || | | | | ||||| | | ||||| ||| Sbjct 20189 TGAATAGA---ACCGTTGTTAGCAATAATACTACTTTTCATAGCATCATTCCAGACACCC 20133 Query 109684 ACCTTTTTGAGAT-CGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGT 109742 | | | || | ||||||| || ||||| | |||||| || || | Sbjct 20132 AAATCAACCAAATCCTTCAACAA-ATATGGATTGACAATTTGAAATTCTCCTGCTAACAC 20074 Query 109743 GCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTG 109802 | || | ||| ||||||| ||||| |||||||||||||||||||| || | ||||| Sbjct 20073 TCTTCTGGAGTAAATGTTAGAAGTGTATGGTTCGAAACACTCATTGTTACCCAAAATTTG 20014 Query 109803 TGCAGTGGAAGCTGTGGGCATGGGAGCCA-TGAGAAGACTGTTTCGGAGACCCTTCGTCT 109861 || || ||||| || ||||| ||||| | | | ||| ||||| | ||| | | Sbjct 20013 TGATGTAGAAGCAGTAGGCATTGGAGCAACTAATAAG-GAGTTTCTCATACCATGC---- 19959 Query 109862 TTACCCGCTCACGCATTGCGTCCCAAT-CATAACGACCACTAAATTTAGT---CTCACCA 109917 ||| | | ||| || ||| || | | | | |||| ||| | | Sbjct 19958 TTAGC------CAAATTTTGTTTTAATGTATCCCAATCCCATAATTCAGTTGGTTTTCTG 19905 Query 109918 TCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGA-AACTCTCGTA 109976 | ||| | ||| || | || ||| | || ||||| | | ||| || || | ||||| Sbjct 19904 TTCCATAAATCAAACTGTAATAAACCTTGAGAGGCAGG-GGAGCCTGGATAAGTTTCGTA 19846 Query 109977 CGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTC 110036 | || || | | ||||| || ||||| || | || ||||| || |||||||| Sbjct 19845 GGCACCTTCTTCTTTAGCCAATTCAACAGAAGCTTCAACAGCAGCATGGTAAATAGTCTC 19786 Query 110037 AAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAA-AGAA 110095 ||||| ||| || | | | |||| |||| || || | | | ||| | Sbjct 19785 GAAAATTTGAATGTTTAATTCTCTGGCTTCTTGGGAGTCAAATGGTA-ATCTCAATTCCA 19727 Query 110096 TAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC 110155 |||| |||| || | ||| |||||||| | | |||| || | || |||| || || Sbjct 19726 TAAAGGCATCAGCCAAACCTTGAACACCCAAAGCAATTGGTCTGTGTCTCATATTTGA-- 19669 Query 110156 GTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCG 110212 || | | |||| || |||||| ||||||||| || || | || | || | Sbjct 19668 -TCTTTCGGCTTCTGGAACTGGGTAATGGTTGCGGTCAATAACTCTGTTCAAGTTACGGG 19610 Query 110213 TCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAAC---GTTTTCGT---CTCCT 110266 | || ||| |||| ||||| | || || | | | || || || | || Sbjct 19609 TGACTACCTTGGTGACATCATGTAACTTATCAAAGTTGTACCAAGTATTACTTTGATCGC 19550 Query 110267 TATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGT 110326 | | ||| || || | |||||| || || | || || |||| || ||| Sbjct 19549 TTTCAACAAATGATGGTAAAGCAATGGAGGCCAAGTTACAAACAGCGACTTCATCTGGAG 19490 Query 110327 CGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCT 110386 | | ||||| | |||||| ||| ||||||||| ||||| | |||||||||||| | Sbjct 19489 CAGAATATTCAACAATTTCACAACATAAGTTGGAAGATTTAATAATACCCAAGTTCTTTT 19430 Query 110387 GATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCT 110446 | || |||||| ||| |||| ||| || || | ||| |||| ||||| ||||| || | Sbjct 19429 GGTTGGATTTGTTGTTACATGAATCTTTGTACAACATAAATGGAGTACCCGTTTCTGTTT 19370 Query 110447 GTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGA-GACCT 110505 | | | || || | ||| | | ||| || | | || || | | | Sbjct 19369 GGGCTCCCAAGATAGCGTACCACAATTTTTGGGCCTTGA-TGGTCTGTCTGCCACGGTTT 19311 Query 110506 TCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCC 110565 || | ||||| |||| || || || || ||||| | ||||| ||||||| | ||| Sbjct 19310 TCTTTTTCGTATCTGGTATATAATTCTTCGAATTCGTCACCGTAAACATCAGCCAAACCT 19251 Query 110566 TTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625 |||| | || |||| | | ||||| || | || || || ||||||||| Sbjct 19250 GGGGCCTCATTTGGTGAGAACAAAGTCCAATCACCGTTTTGTTCGACTCTTTTCATGAAC 19191 Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTCAC-GGCAACGAGCCTCTTCATCACCTTG 110684 | ||| |||||||| | || | ||| | || | ||| || ||||| | ||| || Sbjct 19190 AAGTCTGGAATCCATAAAGCTGGGAACAAATCTCTGGCTCTGA-TTTCTTCTTTACCATG 19132 Query 110685 GTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGC 110744 || | | || | || || | ||| || |||||||||||| | || | || Sbjct 19131 ATTCTTTCTGATGTCAATGAAATCAAAGATGTCACTGTGCCATGGTTCTAAGTACAAGGC 19072 Query 110745 GATGGATCC----CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGA 110800 | || || ||| | ||| | || | |||||| ||||| ||| |||||| | Sbjct 19071 AAAGGCACCAGGTCTTTTG-TTACCACCTTGATCAACATAACGTGCAGTGTTATTGAACA 19013 Query 110801 CCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTA 110859 | || | ||| |||||||| |||| || |||||| ||||| ||| | | || | Sbjct 19012 CTCTTACCATTGGAATAATACCATTAGAAGTACCATTGGTACCAGCAATGTAAGCAC-CA 18954 Query 110860 TTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCA 110919 | | |||||||| ||||||||| | |||||| || || || | || ||| ||| Sbjct 18953 GTAGAACGAATGTTGTGGATATGTAAACCAATCCCTCCTGCACTTTTTGAAATCAAAGCA 18894 Query 110920 CACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAG 110979 ||| | | | ||| |||| ||||| ||||| ||||| |||| | |||| | ||| Sbjct 18893 CACGATTTTAAAGTATCATATATACCTTCAATAGAATCATCCTTCATAGCAAGCAAGAAG 18834 Query 110980 CAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATG 111039 || |||||||| || || | || || || |||||||| | ||| | |||| | Sbjct 18833 CATGAAGACATTTGCGGTCTTGGTGTACCAGCATTGAACAAGCAAGGAGAACCATGGGTA 18774 Query 111040 AACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGA 111099 || | | ||| |||||| ||| || || || | | |||| ||| |||||||| Sbjct 18773 AAGAATCTTTGAGACATCAAGTTATAGGTTTCAATGACTCTTGGTATATCATTACCGTGG 18714 Query 111100 ATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCG 111141 ||||||| || |||| ||||| || || ||| || ||||| Sbjct 18713 ATACCAACAGCGACTCTCATGATCAAATGTTGGGGTCTTTCG 18672 >seq6 Length=122245 Score = 89.7 bits (98), Expect = 6e-13 Identities = 126/175 (72%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 158478 TTATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTA--TCAACGTTGGT 158535 |||||| ||||| ||||| ||||| || |||||||||||||| ||| ||||| |||| Sbjct 18138 TTATGGCCGTGTTGCACCACGTTCAGGATTGGCTGTGAAGCATGGTATTTCAAC--TGGT 18195 Query 158536 GCGGGGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGGA 158595 || || || || || | |||||| ||| ||||| ||||| || | || ||||| | Sbjct 18196 GCTGGTGTTATTGACGCCGATTATCGTGGTGAAGTGAAAGTAGTCTTATTTAATCACAGT 18255 Query 158596 GACAAGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAAC 158650 || || || || || |||| | ||||| | || || || | || |||||| Sbjct 18256 GATAAAGATTTCGAAATTAAAGAAGGTGACAGAATTGCTCAATTGGTATTAGAAC 18310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588970272208400