Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq65 168 8e-37 seq6 111 2e-19 seq241 105 8e-18 seq240 93.3 5e-14 >seq65 Length=45114 Score = 168 bits (186), Expect = 8e-37 Identities = 847/1324 (64%), Gaps = 43/1324 (3%) Strand=Plus/Minus Query 105896 TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGT 105955 |||||||| ||| ||||| || | |||||| || ||||| | ||||| ||| Sbjct 20102 TTGACAATTTGAAATTCTCCTGCTAACACTCTTCTGGAGTAAATGTTAGAAGTGTATGGT 20043 Query 105956 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 106015 || || || ||||| |||||||| ||||||| || || || || |||||||| || | Sbjct 20042 TCGAAACACTCATTGTTACCCAAAATTTGTGATGTAGAAGCAGTAGGCATTGGAGCAACT 19983 Query 106016 AAAAGACTGTTACGAAGACCCT--TTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG- 106072 || | ||| | | ||| | || | || || || | |||||| || Sbjct 19982 AATAAGGAGTTTCTCATACCATGCTTAGCCAAATT--TTGTTTTAATGTATCCCAATCCC 19925 Query 106073 -TAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGG 106131 || || || ||||||| |||| | | |||||| || | | ||||| || | || Sbjct 19924 ATAATTCAG-TTGGTTTTCTGTTCC-ATAAATCAAACTGTAATAAACCTTGAGAGGCAGG 19867 Query 106132 AGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCA-CAGCTCGCCTCCA 106190 || || | | || || |||| ||||| ||| |||||||||| ||| || || | Sbjct 19866 GGAGCCTGGATAAGTTTCGTAGGCACCTTCTTCTTTAGCCAATTCAACAGAA-GCTTCAA 19808 Query 106191 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 106250 | || || || || || || || || || || | || ||||||| | || | Sbjct 19807 CAGCAGCATGGTAAATAGTCTCGAAAATTTGAATGTTTAATTCTCTGGCTTCTTGGGAGT 19748 Query 106251 CAAATGCGTAGCGGCACAAA---ATAAATACATCCGCGAGACCTTGAACACCCAAACCAA 106307 |||||| ||| | ||| ||||| |||| || | |||||||||||||||| ||| Sbjct 19747 CAAATG-GTAAT--CTCAATTCCATAAAGGCATCAGCCAAACCTTGAACACCCAAAGCAA 19691 Query 106308 TAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTC 106365 | |||||||||| |||||| || |||||| || ||| ||| || ||| || | ||| Sbjct 19690 TTGGTCTGTGTCTCATATTTGATCTTTCG-GC-TTCTGGAACTGGGTAATGGTTGCGGTC 19633 Query 106366 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA--- 106422 ||| |||| ||| | || ||| || | ||| |||| ||||| | || ||| | Sbjct 19632 AATAACTCTGTTCAAGTTACGGGTGACTACCTTGGTGACATCATGTAACTTATCAAAGTT 19573 Query 106423 --ATCAA----AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAA 106476 | ||| | | || || ||| | ||| | ||| | || || || ||||| Sbjct 19572 GTACCAAGTATTACTTTGA-TCGCTT--TCAACAAATGATGGTAAAGCAATGGAGGCCAA 19516 Query 106477 ATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGA 106536 || |||||||| ||||| | | | || || | |||||| ||| |||||||| Sbjct 19515 GTTACAAACAGCGACTTCATCTGGAGCAGAATATTCAACAATTTCACAACATAAGTTGGA 19456 Query 106537 ACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAG 106596 | ||||| | ||||| ||||||||||| || ||||| || | ||| ||||| | Sbjct 19455 AGATTTAATAATACCCAAGTTCTTTTGGTTGGATTTGTTGTTACATGAATCTTTGTACAA 19396 Query 106597 CATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGC 106656 ||| | || || ||||| || || || | | || || | ||||| | ||| Sbjct 19395 CATAAATGGAGTACCCGTTTCTGTTTGGGCTCCCAAGATAGCGTACCACAATTTTTGGGC 19336 Query 106657 --TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAAC 106714 || | || | || | || || ||||| | || || | |||| || Sbjct 19335 CTTGATGGTCTGTC--TGCCACGGTTTTCTTTTTCGTATCTGGTATATAATTCTTCGAAT 19278 Query 106715 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 106774 || ||||| | || | | |||||| |||| | ||| |||| | || ||| | | Sbjct 19277 TCGTCACCGTAAACATCAGCCAAACCTGGGGCCTCATTTGGTGAGAACAAAGTCCAATCA 19218 Query 106775 CCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 106834 || | || || | |||||||| | |||||||||||| | | || || | |||| Sbjct 19217 CCGTTTTGTTCGACTCTTTTCATGAACAAGTCTGGAATCCATAAAGCTGGGAACAAATCT 19158 Query 106835 CT-ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATC 106893 || | | || ||||| | ||| || || || | |||| ||| || | ||| || Sbjct 19157 CTGGCTCTGA-TTTCTTCTTTACCATGATTCTTTCTGATGTCAATGAAATCAAAGATGTC 19099 Query 106894 CGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGAT 106949 ||||||||| || | || | || | | || |||| | ||| |||||| Sbjct 19098 ACTGTGCCATGGTTCTAAGTACAAGGCAAAGGCACCAGGTCTTTTG-TTACCACCTTGAT 19040 Query 106950 TTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGAC 107009 ||||| || || ||| || || || | | ||||||||||||||||| || || Sbjct 19039 CAACATAACGTGCAGTGTTATTGAACACTCTTACCATTGGAATAATACCATTAGAAGTAC 18980 Query 107010 CATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATAC 107069 |||| || || ||| || | | | | | | ||||| || | ||||| | Sbjct 18979 CATTGGTACCAGCAATGTAAGCACCAGTAGAACGAATGTTGTGGATATGTAAACCAATCC 18920 Query 107070 CCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 107129 | || || | ||||| || |||||| | | ||| |||| ||||| | || | Sbjct 18919 CTCCTGCACTTTTTGAAATCAAAGCACACGATTTTAAAGTATCATATATACCTTCAATAG 18860 Query 107130 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCAT 107189 | || ||||| | || | | |||||| ||||| |||||||||||||||||||||| Sbjct 18859 AATCATCCTTCATAGCAAGCAAGAAGCATGAAGACATTTGCGGTCTTGGTGTACCAGCAT 18800 Query 107190 TGAA 107193 |||| Sbjct 18799 TGAA 18796 >seq6 Length=122245 Score = 111 bits (122), Expect = 2e-19 Identities = 110/141 (78%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 155044 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 155103 ||||| |||||||||||||| || || | |||||||||||||||||| | |||||| Sbjct 18139 TATGGCCGTGTTGCACCACGTTCAGGATTGGCTGTGAAGCATGGTATTTCAACTGGTGCT 18198 Query 155104 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 155163 ||||||||||| |||| ||| |||||||| ||||| || | || |||||| | || Sbjct 18199 GGTGTTATTGACGCCGATTATCGTGGTGAAGTGAAAGTAGTCTTATTTAATCACAGTGAT 18258 Query 155164 AAAGACTTTG-AGGTAAAGAA 155183 ||||| || | | ||||||| Sbjct 18259 AAAGATTTCGAAATTAAAGAA 18279 >seq241 Length=19529 Score = 105 bits (116), Expect = 8e-18 Identities = 352/536 (66%), Gaps = 39/536 (7%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||| ||||||| | |||| | || |||||||| | ||| Sbjct 9213 GCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCCT 9272 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 117392 ||||| | ||| | ||| |||||||| | |||| ||| ||||| || ||||| || Sbjct 9273 GGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCA-AATGAACCACTAAAGAAAAT 9331 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTG----T 117448 ||| || || ||||| |||| | | || | | | || ||| | | Sbjct 9332 ACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATA----CAAGGCTTCATCATCTT 9387 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGG--ATGGC 117506 || |||||| || ||||| | || ||||| | ||||||||| | | |||| ||||| Sbjct 9388 GAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATA--TTGGCAATGGC 9445 Query 117507 TTCAAATAACT-----GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTT 117561 | |||||| | ||||||| || ||| || ||||| | ||||| ||| Sbjct 9446 ATTAAATAAGTAATCGGCTTCTTG--AGG---ATCTTTTATGTAAGTTTCAATTAATAAA 9500 Query 117562 GAATATGTTTCGCCATGAACCATTTC-ATTATGGCATTGATATGCGTAGAATGAGCGCGC 117620 || || ||||| ||||| |||| || ||| | || | |||||||||| || Sbjct 9501 GAGTAGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAAC-CGTAGAATGATTTGGC 9559 Query 117621 TTCGCTTATCTGCACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATC 117680 |||| | || |||||| || || || | | | | || ||| |||||| ||||| Sbjct 9560 TTCGGGAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATC 9619 Query 117681 GGACCCAGCAAAGAATGCCAGGATGTACTTTATG-----AATTTCTTTTCATTTTCATTC 117735 || |||| || ||||||| |||| || ||| ||||| ||||||||||| Sbjct 9620 AGAAGCAGCGAAAAATGCCAA----TACTCTAGAGACAAAATATCTTT-CATTTTCATTC 9674 Query 117736 A---GGGTCTTCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 | | | |||||||| || | |||||| |||||| | |||||| || ||||| Sbjct 9675 AATTTGTTATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCA 9730 >seq240 Length=19657 Score = 93.3 bits (102), Expect = 5e-14 Identities = 193/284 (68%), Gaps = 9/284 (3%) Strand=Plus/Plus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGC- 9337 ||||| |||||||| ||| ||| | ||| || | ||| ||| ||||||||||| || Sbjct 8572 TCAAACCCATCCATTTCTACCAACAATTGATTCAATGTTGTTTCACGTTCATCATTGGCA 8631 Query 9338 ----TGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGA 9393 |||||| || | | | ||||| || || | ||||| || ||||||| || | Sbjct 8632 CCAGTGGCATTCCCCTTGGAA--CGTTGTTTACCAATAGCATCGATTTCATCAACAAACA 8689 Query 9394 CAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 |||| | || |||||| || || | | ||| | ||| ||||| || || || | Sbjct 8690 CAATCGAAGGGGCATTTTCACGTGCAGTCTTAAATAAATCACGAACTCTAGATGCTCCAA 8749 Query 9454 CACCAACAAACATCTCCACAAAGTTTG-CGGCGGAACATTGGATGAAGGGGACATTAGAT 9512 ||||||||||||| || ||||| | || | | |||| | | ||| || || | | Sbjct 8750 CACCAACAAACATTTCTACAAATTCTGACCCAGAAACAGAGTA-GAATGGAACTCCTGCT 8808 Query 9513 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTgg 9556 ||||| ||| | || ||| || | ||| ||||| || ||||| Sbjct 8809 TCACCAGCAGTTGCCTTGGCAAGTAAAGTTTTACCTGTCCCTGG 8852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975062436720