Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23]
778 sequences; 14,044,856 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq65 190 2e-43
seq6 111 2e-19
seq241 105 8e-18
>seq65
Length=45114
Score = 190 bits (210), Expect = 2e-43
Identities = 848/1320 (64%), Gaps = 35/1320 (3%)
Strand=Plus/Plus
Query 75329 TTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388
|||||||||||||||||||||||||| ||||| |||||| | | || | |||||
Sbjct 18796 TTCAATGCTGGTACACCAAGACCGCAAATGTCTTCATGCTTCTTGCTTGCTATGAAGGAT 18855
Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448
|| || || | ||||| |||| ||| | | |||||| || ||||| | ||
Sbjct 18856 GATTCTATTGAAGGTATATATGATACTTTAAAATCGTGTGCTTTGATTTCAAAAAGTGCA 18915
Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508
|| || ||||| | || ||||| | | | | | | || ||| || ||
Sbjct 18916 GGAGGGATTGGTTTACATATCCACAACATTCGTTCTACTGGTGCTTACATTGCTGGTACC 18975
Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568
|||||| || ||||||||||||||||| | | || || || ||| || || |||
Sbjct 18976 AATGGTACTTCTAATGGTATTATTCCAATGGTAAGAGTGTTCAATAACACTGCACGTTAT 19035
Query 75569 GTAAATCAAGCGGGGCGTCGCAAGG---GGT-CCATCGCGGTCTACTTGGAACCATGGCA 75624
|| |||||| | || | ||| ||| || | || | ||||| |||||||||||
Sbjct 19036 GTTGATCAAG-GTGGTAACAAAAGACCTGGTGCCTTTGCCTTGTACTTAGAACCATGGCA 19094
Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684
|| ||| | || ||| |||| | || || || ||| | ||||| || | |
Sbjct 19095 CAGTGACATCTTTGATTTCATTGACATCAGAAAGAATCATGGTAAAGAAGAAA-TCAGAG 19153
Query 75685 T-AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743
|||||| | || || | | |||||||||||| | |||||||| | || || |
Sbjct 19154 CCAGAGATTTGTTCCCAGCTTTATGGATTCCAGACTTGTTCATGAAAAGAGTCGAACAAA 19213
Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTG 75803
||| | ||| || | |||| ||| | |||| |||||| | | || | ||||
Sbjct 19214 ACGGTGATTGGACTTTGTTCTCACCAAATGAGGCCCCAGGTTTGGCTGATGTTTACGGTG 19273
Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863
| || || |||| | || || | || ||| | || | | || ||| | |
Sbjct 19274 ACGAATTCGAAGAATTATATACCAGATACGAAAAAGAAAACCGTGGCAGACAGACCAT-C 19332
Query 75864 CAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922
|| | | | || ||| | ||||| | | | || || || || || || |||| |
Sbjct 19333 AAGGCCCAAAAATTGTGGTACGCTATCTTGGGAGCCCAAACAGAAACGGGTACTCCATTT 19392
Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982
||| | ||||| ||| | |||||||| || ||||||||||| ||||| | || ||
Sbjct 19393 ATGTTGTACAAAGATTCATGTAACAACAAATCCAACCAAAAGAACTTGGGTATTATTAAA 19452
Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042
|| || | || |||||| | || || | | | ||||| ||||||||
Sbjct 19453 TCTTCCAACTTATGTTGTGAAATTGTTGAATATTCTGCTCCAGATGAAGTCGCTGTTTGT 19512
Query 76043 AATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTT----TTGA 76098
|| ||||| || || || | ||| | ||| | ||| || || | | |||
Sbjct 19513 AACTTGGCCTCCATTGCTTTACCATCATTTGTTGA--AAGCGA-TCAAAGTAATACTTGG 19569
Query 76099 T-----TATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTC 76153
| | ||| || | ||||| |||| ||| | || ||| || | ||| ||||
Sbjct 19570 TACAACTTTGATAAGTTACATGATGTCACCAAGGTAGTCACCCGTAACTTGAACAGAGTT 19629
Query 76154 ATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAG-TCTAATATGCGACACAGAC 76211
|||||| | || ||| || ||| ||| || |||||| || |||||| |||||||||
Sbjct 19630 ATTGACCGCAACCATTACCCAGTTCCAGAA-GC-CGAAAGATCAAATATGAGACACAGAC 19687
Query 76212 CTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT---TTTGTGCCGCTACGCAT 76268
| |||| |||||||||||||||| | || |||| ||||| ||| | ||| |||
Sbjct 19688 CAATTGCTTTGGGTGTTCAAGGTTTGGCTGATGCCTTTATGGAATTGAG--ATTAC-CAT 19744
Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328
|||| || | ||||||| || | || || || || || || || || || ||
Sbjct 19745 TTGACTCCCAAGAAGCCAGAGAATTAAACATTCAAATTTTCGAGACTATTTACCATGCTG 19804
Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388
| | || || | |||||||||| ||| ||||| |||| || || | | || |
Sbjct 19805 CTGTTGAAGCTTCTGTTGAATTGGCTAAAGAAGAAGGTGCCTACGAAACTTATCCAGGCT 19864
Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACT 76448
| || || || ||||| | | ||||||||| | | |||| ||||||| || || |
Sbjct 19865 CCCCTGCCTCTCAAGGTTTATTACAGTTTGATTTAT-GGAACAGAAAACCAA-CTGAATT 19922
Query 76449 A--CGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 76506
| || |||||| | || || | || | ||| | | ||| | ||
Sbjct 19923 ATGGGATTGGGATACATTAAAACAAAATTTGGCTAAGCATGGTATGAGAAACTCCTTATT 19982
Query 76507 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 76566
| || |||||||| || || || || ||||||| |||||||| ||||| || || ||
Sbjct 19983 AGTTGCTCCAATGCCTACTGCTTCTACATCACAAATTTTGGGTAACAATGAGTGTTTCGA 20042
Query 76567 ACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAA 76626
||||||||| | ||||| ||| |||||| | ||||| || ||| ||||||||
Sbjct 20043 ACCATACACTTCTAACATTTACTCCAGAAGAGTGTTAGCAGGAGAATTTCAAATTGTCAA 20102
>seq6
Length=122245
Score = 111 bits (122), Expect = 2e-19
Identities = 110/141 (78%), Gaps = 1/141 (1%)
Strand=Plus/Minus
Query 27892 TTCTTTACCT-CAAAGTCTTTGTCTCCGTGATTGAAGAGAACGACTTTGACTTCACCTGT 27950
||||||| | | || ||||| || | |||||| || | || ||||| ||||||||
Sbjct 18279 TTCTTTAATTTCGAAATCTTTATCACTGTGATTAAATAAGACTACTTTCACTTCACCACG 18220
Query 27951 ATAGTCGGGATCAATAACACCCGCACCAACTTGAATACCATGCTTCACAGCGAGACCGGA 28010
||| |||| ||||||||||| |||||| | |||||||||||||||||| | || ||
Sbjct 18219 ATAATCGGCGTCAATAACACCAGCACCAGTTGAAATACCATGCTTCACAGCCAATCCTGA 18160
Query 28011 TCGTGGTGCAACACGACCATA 28031
|||||||||||||| |||||
Sbjct 18159 ACGTGGTGCAACACGGCCATA 18139
>seq241
Length=19529
Score = 105 bits (116), Expect = 8e-18
Identities = 352/536 (66%), Gaps = 39/536 (7%)
Strand=Plus/Minus
Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770
||||| || |||||| | |||||| |||||| | || |||||||| | | |||||
Sbjct 9730 TGGACCGCCGAAGAAATCGATTTGAGTAAAGATTTGGATGACTGGAATAACAAATTGAAT 9671
Query 64771 GAAAATGAAAAGAAATT-----CATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATG 64825
||||||| ||||| ||| || |||| ||||||| || |||| || ||||
Sbjct 9670 GAAAATG-AAAGATATTTTGTCTCTAGAGTA----TTGGCATTTTTCGCTGCTTCTGATG 9616
Query 64826 GAATTGTTTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGC 64885
| |||||| ||| || | | | | || || || |||||| || | ||||||
Sbjct 9615 GTATTGTTGGTGAAAACTTAATTGAAAACTTCTCGACTGAAGTTCAACTTCCCGAAGCCA 9556
Query 64886 GCTCATTCTACGCATATCAATGCCATAAT-GAAATGGTTCATGGCGAAACATATTCAAAA 64944
|||||||||| | || | ||| || |||| ||||| ||||| || || |
Sbjct 9555 AATCATTCTACG-GTTTCCAAATCATGATGGAAAACATTCATTCAGAAACCTACTCTTTA 9497
Query 64945 TTGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGC-----AGTTATTTGAAGCCA 64999
|| ||||| | ||||| || ||| || ||||||| | |||||| | ||||
Sbjct 9496 TTAATTGAAACTTACATAAAAGAT---CCT--CAAGAAGCCGATTACTTATTTAATGCCA 9442
Query 65000 T--CCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGA--- 65054
| |||| | | ||||||||| | ||||| || | ||||| || |||||| || |
Sbjct 9441 TTGCCAA--TATTCCATGTATTCAAAAGAAAGCTGACTGGGCTATCAAATGGATTCAAGA 9384
Query 65055 -CACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCT 65113
| ||| || | | | || | | |||| ||||| || || ||||| |
Sbjct 9383 TGATGAAGCCTTG----TATGGTGAAAGATTAGTTGCCTTTGCTGCAGTTGAAGGTATTT 9328
Query 65114 TCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172
|||| || ||||| ||| |||| | |||||||| ||| | ||| | ||||||||
Sbjct 9327 TCTTTAGTGGTTCATT-TGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTAATGCCAGGG 9269
Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228
| |||||||| || | |||| | ||||||| ||| | ||| || |||||
Sbjct 9268 TTGACTTTCTCAAACGAGTTGATTTGCAGAGATGAAGGTTTACACACTGACTTTGC 9213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596563798360640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |