Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq65 190 2e-43 seq6 111 2e-19 seq241 105 8e-18 >seq65 Length=45114 Score = 190 bits (210), Expect = 2e-43 Identities = 848/1320 (64%), Gaps = 35/1320 (3%) Strand=Plus/Plus Query 75329 TTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 |||||||||||||||||||||||||| ||||| |||||| | | || | ||||| Sbjct 18796 TTCAATGCTGGTACACCAAGACCGCAAATGTCTTCATGCTTCTTGCTTGCTATGAAGGAT 18855 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 || || || | ||||| |||| ||| | | |||||| || ||||| | || Sbjct 18856 GATTCTATTGAAGGTATATATGATACTTTAAAATCGTGTGCTTTGATTTCAAAAAGTGCA 18915 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508 || || ||||| | || ||||| | | | | | | || ||| || || Sbjct 18916 GGAGGGATTGGTTTACATATCCACAACATTCGTTCTACTGGTGCTTACATTGCTGGTACC 18975 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 |||||| || ||||||||||||||||| | | || || || ||| || || ||| Sbjct 18976 AATGGTACTTCTAATGGTATTATTCCAATGGTAAGAGTGTTCAATAACACTGCACGTTAT 19035 Query 75569 GTAAATCAAGCGGGGCGTCGCAAGG---GGT-CCATCGCGGTCTACTTGGAACCATGGCA 75624 || |||||| | || | ||| ||| || | || | ||||| ||||||||||| Sbjct 19036 GTTGATCAAG-GTGGTAACAAAAGACCTGGTGCCTTTGCCTTGTACTTAGAACCATGGCA 19094 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 || ||| | || ||| |||| | || || || ||| | ||||| || | | Sbjct 19095 CAGTGACATCTTTGATTTCATTGACATCAGAAAGAATCATGGTAAAGAAGAAA-TCAGAG 19153 Query 75685 T-AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743 |||||| | || || | | |||||||||||| | |||||||| | || || | Sbjct 19154 CCAGAGATTTGTTCCCAGCTTTATGGATTCCAGACTTGTTCATGAAAAGAGTCGAACAAA 19213 Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTG 75803 ||| | ||| || | |||| ||| | |||| |||||| | | || | |||| Sbjct 19214 ACGGTGATTGGACTTTGTTCTCACCAAATGAGGCCCCAGGTTTGGCTGATGTTTACGGTG 19273 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863 | || || |||| | || || | || ||| | || | | || ||| | | Sbjct 19274 ACGAATTCGAAGAATTATATACCAGATACGAAAAAGAAAACCGTGGCAGACAGACCAT-C 19332 Query 75864 CAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922 || | | | || ||| | ||||| | | | || || || || || || |||| | Sbjct 19333 AAGGCCCAAAAATTGTGGTACGCTATCTTGGGAGCCCAAACAGAAACGGGTACTCCATTT 19392 Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982 ||| | ||||| ||| | |||||||| || ||||||||||| ||||| | || || Sbjct 19393 ATGTTGTACAAAGATTCATGTAACAACAAATCCAACCAAAAGAACTTGGGTATTATTAAA 19452 Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042 || || | || |||||| | || || | | | ||||| |||||||| Sbjct 19453 TCTTCCAACTTATGTTGTGAAATTGTTGAATATTCTGCTCCAGATGAAGTCGCTGTTTGT 19512 Query 76043 AATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTT----TTGA 76098 || ||||| || || || | ||| | ||| | ||| || || | | ||| Sbjct 19513 AACTTGGCCTCCATTGCTTTACCATCATTTGTTGA--AAGCGA-TCAAAGTAATACTTGG 19569 Query 76099 T-----TATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTC 76153 | | ||| || | ||||| |||| ||| | || ||| || | ||| |||| Sbjct 19570 TACAACTTTGATAAGTTACATGATGTCACCAAGGTAGTCACCCGTAACTTGAACAGAGTT 19629 Query 76154 ATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAG-TCTAATATGCGACACAGAC 76211 |||||| | || ||| || ||| ||| || |||||| || |||||| ||||||||| Sbjct 19630 ATTGACCGCAACCATTACCCAGTTCCAGAA-GC-CGAAAGATCAAATATGAGACACAGAC 19687 Query 76212 CTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT---TTTGTGCCGCTACGCAT 76268 | |||| |||||||||||||||| | || |||| ||||| ||| | ||| ||| Sbjct 19688 CAATTGCTTTGGGTGTTCAAGGTTTGGCTGATGCCTTTATGGAATTGAG--ATTAC-CAT 19744 Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328 |||| || | ||||||| || | || || || || || || || || || || Sbjct 19745 TTGACTCCCAAGAAGCCAGAGAATTAAACATTCAAATTTTCGAGACTATTTACCATGCTG 19804 Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388 | | || || | |||||||||| ||| ||||| |||| || || | | || | Sbjct 19805 CTGTTGAAGCTTCTGTTGAATTGGCTAAAGAAGAAGGTGCCTACGAAACTTATCCAGGCT 19864 Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACT 76448 | || || || ||||| | | ||||||||| | | |||| ||||||| || || | Sbjct 19865 CCCCTGCCTCTCAAGGTTTATTACAGTTTGATTTAT-GGAACAGAAAACCAA-CTGAATT 19922 Query 76449 A--CGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 76506 | || |||||| | || || | || | ||| | | ||| | || Sbjct 19923 ATGGGATTGGGATACATTAAAACAAAATTTGGCTAAGCATGGTATGAGAAACTCCTTATT 19982 Query 76507 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 76566 | || |||||||| || || || || ||||||| |||||||| ||||| || || || Sbjct 19983 AGTTGCTCCAATGCCTACTGCTTCTACATCACAAATTTTGGGTAACAATGAGTGTTTCGA 20042 Query 76567 ACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAA 76626 ||||||||| | ||||| ||| |||||| | ||||| || ||| |||||||| Sbjct 20043 ACCATACACTTCTAACATTTACTCCAGAAGAGTGTTAGCAGGAGAATTTCAAATTGTCAA 20102 >seq6 Length=122245 Score = 111 bits (122), Expect = 2e-19 Identities = 110/141 (78%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 27892 TTCTTTACCT-CAAAGTCTTTGTCTCCGTGATTGAAGAGAACGACTTTGACTTCACCTGT 27950 ||||||| | | || ||||| || | |||||| || | || ||||| |||||||| Sbjct 18279 TTCTTTAATTTCGAAATCTTTATCACTGTGATTAAATAAGACTACTTTCACTTCACCACG 18220 Query 27951 ATAGTCGGGATCAATAACACCCGCACCAACTTGAATACCATGCTTCACAGCGAGACCGGA 28010 ||| |||| ||||||||||| |||||| | |||||||||||||||||| | || || Sbjct 18219 ATAATCGGCGTCAATAACACCAGCACCAGTTGAAATACCATGCTTCACAGCCAATCCTGA 18160 Query 28011 TCGTGGTGCAACACGACCATA 28031 |||||||||||||| ||||| Sbjct 18159 ACGTGGTGCAACACGGCCATA 18139 >seq241 Length=19529 Score = 105 bits (116), Expect = 8e-18 Identities = 352/536 (66%), Gaps = 39/536 (7%) Strand=Plus/Minus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770 ||||| || |||||| | |||||| |||||| | || |||||||| | | ||||| Sbjct 9730 TGGACCGCCGAAGAAATCGATTTGAGTAAAGATTTGGATGACTGGAATAACAAATTGAAT 9671 Query 64771 GAAAATGAAAAGAAATT-----CATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATG 64825 ||||||| ||||| ||| || |||| ||||||| || |||| || |||| Sbjct 9670 GAAAATG-AAAGATATTTTGTCTCTAGAGTA----TTGGCATTTTTCGCTGCTTCTGATG 9616 Query 64826 GAATTGTTTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGC 64885 | |||||| ||| || | | | | || || || |||||| || | |||||| Sbjct 9615 GTATTGTTGGTGAAAACTTAATTGAAAACTTCTCGACTGAAGTTCAACTTCCCGAAGCCA 9556 Query 64886 GCTCATTCTACGCATATCAATGCCATAAT-GAAATGGTTCATGGCGAAACATATTCAAAA 64944 |||||||||| | || | ||| || |||| ||||| ||||| || || | Sbjct 9555 AATCATTCTACG-GTTTCCAAATCATGATGGAAAACATTCATTCAGAAACCTACTCTTTA 9497 Query 64945 TTGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGC-----AGTTATTTGAAGCCA 64999 || ||||| | ||||| || ||| || ||||||| | |||||| | |||| Sbjct 9496 TTAATTGAAACTTACATAAAAGAT---CCT--CAAGAAGCCGATTACTTATTTAATGCCA 9442 Query 65000 T--CCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGA--- 65054 | |||| | | ||||||||| | ||||| || | ||||| || |||||| || | Sbjct 9441 TTGCCAA--TATTCCATGTATTCAAAAGAAAGCTGACTGGGCTATCAAATGGATTCAAGA 9384 Query 65055 -CACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCT 65113 | ||| || | | | || | | |||| ||||| || || ||||| | Sbjct 9383 TGATGAAGCCTTG----TATGGTGAAAGATTAGTTGCCTTTGCTGCAGTTGAAGGTATTT 9328 Query 65114 TCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 |||| || ||||| ||| |||| | |||||||| ||| | ||| | |||||||| Sbjct 9327 TCTTTAGTGGTTCATT-TGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTAATGCCAGGG 9269 Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 | |||||||| || | |||| | ||||||| ||| | ||| || ||||| Sbjct 9268 TTGACTTTCTCAAACGAGTTGATTTGCAGAGATGAAGGTTTACACACTGACTTTGC 9213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563798360640