Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23]
778 sequences; 14,044,856 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq241 284 2e-71
seq22 212 9e-50
seq221 141 1e-28
>seq241
Length=19529
Score = 284 bits (314), Expect = 2e-71
Identities = 572/842 (68%), Gaps = 22/842 (3%)
Strand=Plus/Plus
Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919
|||||||| ||| ||| ||| |||| || |||||||| ||||| || |||| || ||
Sbjct 8915 AGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAAGAAAT 8974
Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCG 17977
| ||| ||||||||||||||||| || || || ||| ||||| ||| |
Sbjct 8975 GTTTTCCATGAAATCAAATGGATTAGTAACATTGTA-TACTTT-CTTGTTACCTAAGGCC 9032
Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037
| || |||||||| || || ||||| | ||||| ||||||| | || ||||||||
Sbjct 9033 AACAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCATACCC 9092
Query 18038 AGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTT 18097
| | | || |||||||| ||| | |||||||| | ||||||| || |
Sbjct 9093 AACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTTCAGTA 9152
Query 18098 ATTATGTTTATTACC----CTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAA 18153
|| || ||| || || || | | | ||| || || | | | ||
Sbjct 9153 ATAATTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAA-------ATGAGCAAACAA 9205
Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213
|||||| ||||| |||||||||||||||||||||||| | || || ||||| || ||
Sbjct 9206 TAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGT 9265
Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273
||||| ||||||| |||||| ||||| | ||| || || || || || || | |||
Sbjct 9266 CAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAA 9325
Query 18274 GAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGC 18332
||| ||||| ||||| ||| || || || | |||||||||| || | | || ||
Sbjct 9326 GAAAATACCTTCAACTGCA-GCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCAT 9384
Query 18333 TCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392
| |||||||| ||||| || ||| ||||| || ||| | | || |
Sbjct 9385 CTTGAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGG 9444
Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452
||||||| || | ||| ||||| | ||||||||| ||||| || ||||| ||||| |
Sbjct 9445 CATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGT 9504
Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512
| |||| ||||| ||| ||||||| || || |||| || || ||| | || ||||
Sbjct 9505 AGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGG 9564
Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572
|| ||||| || | | || |||| | || || ||| ||| ||||| |||| ||
Sbjct 9565 GAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAG 9624
Query 18573 ATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGAGATTG--- 18628
|||||||||||||| || | | | | |||| | ||||||| || || | |||
Sbjct 9625 CAGCGAAAAATGCCAATAC-TCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTTA 9683
Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688
||||| ||||| | |||||| | ||| | |||||| | ||||| ||||| | |||
Sbjct 9684 TTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTTCA 9743
Query 18689 GC 18690
||
Sbjct 9744 GC 9745
>seq22
Length=82586
Score = 212 bits (234), Expect = 9e-50
Identities = 552/832 (66%), Gaps = 22/832 (3%)
Strand=Plus/Minus
Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920
|| |||| ||| || ||| | || || |||||||| || || || ||||||| ||
Sbjct 9505 GCCTTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAATGAGATA 9446
Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT 17980
| ||||||||||||||||||||| || ||||| |||| | | || | |
Sbjct 9445 TTTTCCATAAAATCAAATGGATTAGTAACATTGTAATACTTTTTATTTCCAAAGGCCACT 9386
Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGT 18040
||||||| ||| || |||||||| ||||| || ||||||| || |||||||| || | |
Sbjct 9385 AATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAAT 9326
Query 18041 AGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATT 18100
| | || || ||||| | | | ||| |||||| || |||| ||| | ||
Sbjct 9325 AAAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATG 9266
Query 18101 ATGTTTATTACCCTAGATTT-TGGCAA---TTTATTAATTATGTGATTATAATATAATAA 18156
|| ||| | | ||||| ||| | |||||| ||| | | | |||| | ||
Sbjct 9265 AT-TTTCTCAAT---GATTTCTGGAGAAGGTTTATTCTTTAAAT-ACGAGAATA--ACAA 9213
Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216
||| ||| |||| ||||| | ||||| |||| | | || ||||| || ||| || ||
Sbjct 9212 ACAGGCATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAA 9153
Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAA---ACTACTAGAAAA 18273
|| ||||| | || ||||| |||| ||| || || | ||| || || ||| |||||
Sbjct 9152 TCCTGGCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACT-GAAAA 9094
Query 18274 GAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTGC 18332
||||||| |||||| || ||||| | ||||| |||||| | | | || |
Sbjct 9093 --ATATACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTC 9036
Query 18333 TCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392
| | ||||| | ||||| || ||| || | || ||| | || ||||
Sbjct 9035 TT-GAATCCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAG 8977
Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452
||||||||||| || ||||| | || || | || || ||||||||||| ||||
Sbjct 8976 CATTAAACAAAAAGTCCGCTTCTTCTGGGTCCTTGAAGTATGTTTCGATTAACAACGAAT 8917
Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512
| | || ||||| ||| ||||||| |||||||| | || | | | |||||| |
Sbjct 8916 AAGTCTCTGAATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCTCTG 8857
Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572
| ||| | || | | || |||| ||||| |||||||| || ||||| || | |
Sbjct 8856 GTATTTGTACTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGG 8797
Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATTGT 18629
|| || |||||||| || |||||| | ||||||| || || | |||||
Sbjct 8796 CAGCAAAGAATGCCAACACTCGGGAGATGAAAAATCTTTCATTTTCGTTCATTTTATTGT 8737
Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681
|||| || | | |||||| || |||| ||||| | ||||||||| ||
Sbjct 8736 TCCAGTCGGCCAAATCTTTACTTAAGTCAAGCTCTTCAGCTGTCCAAAACGA 8685
>seq221
Length=21533
Score = 141 bits (156), Expect = 1e-28
Identities = 171/231 (74%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || || ||||| ||||| ||||| |||||||| ||| ||||
Sbjct 9966 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACCATTACTTTAGAAGTTGAATCTTCT 10025
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || || || ||||| ||||| |||||||| || || ||||| |||
Sbjct 10026 GACACTATTGACAATGTCAAGTCCAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAA 10085
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||||| |||| ||| ||||| || | ||||| ||||||||||| || || |
Sbjct 10086 CAAAGATTAATTTTTGCTGGTAAACAATTGGAAGACGGTAGAACTTTATCTGACTACA-- 10143
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
| ||||||| || | || | || || || || ||||||||||| ||||
Sbjct 10144 ACATCCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTAAGAGGTGGTG 10194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731864882544800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |