Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq241 199 8e-46 seq221 168 1e-36 seq22 150 4e-31 >seq241 Length=19529 Score = 199 bits (220), Expect = 8e-46 Identities = 512/780 (66%), Gaps = 12/780 (2%) Strand=Plus/Plus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATAATA 49650 ||| |||||||||||||| | ||| || || ||| | || | || | | || | Sbjct 8981 CATGAAATCAAATGGATTAGTAACATTGTA-TACTTTCTTGTTACCTAAGGCCAACAACA 9039 Query 49651 ATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATT 49710 ||||||| || || ||||||| ||||| |||| || | ||| ||||||||||| || Sbjct 9040 ATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCATACCCAACAAGG 9099 Query 49711 TAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatca 49770 | ||| | ||||| || | ||||| || | || ||||||| |||| || Sbjct 9100 ACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTTCAGTAATAATTT 9159 Query 49771 taattatattattttttgataatttatatttaatatgattcgcatatattaaACATGCAA 49830 | | | | | | ||| | | | || | |||| ||| | | |||||| |||| Sbjct 9160 TTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGA---GCAAACAATAAACAAGCAA 9216 Query 49831 AATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCA 49890 | ||||| |||||||| || || || | || || || || ||||| || ||||||| Sbjct 9217 AGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCCTGGCA 9276 Query 49891 TTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCT 49950 |||| ||||||||||| | ||| || || || ||||| || | |||||| ||||| | Sbjct 9277 TTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAGAAAATACCTT 9336 Query 49951 CGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAAT 50010 | || ||||| || | || |||| | ||| ||| || ||||||| ||||| | Sbjct 9337 CAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATCTTGAATCCATT 9396 Query 50011 TTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATT 50070 | |||||||| || ||||| |||| ||| | || ||||| | || || |||||||| | Sbjct 9397 TGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCATTAAATAAGT 9456 Query 50071 CAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAAT 50130 || ||| | ||||||||||| || |||| |||| Sbjct 9457 AATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGTAGGTTTCTGAAT 9516 Query 50131 GTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAACTT 50190 | | |||||| ||||| || || ||| | | ||||| | | ||||||| Sbjct 9517 GAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGGGAAGTTGAACTT 9576 Query 50191 CGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATG 50250 | | |||| ||||| ||| || ||| |||||||||||||| || ||||| |||| Sbjct 9577 CAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAGCAGCGAAAAATG 9636 Query 50251 CTAAAACGTATTTA-ATAAAATGTTTTTCATTATCTTTTAAATT----TTCCCAAGATTC 50305 | || || | | | | ||||| | ||||||| || || || || |||| || | Sbjct 9637 CCAATAC-TCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTTATTCCAGTCATCC 9695 Query 50306 AAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATA 50365 || ||| || ||||| | |||||| ||||| || || ||| | | ||| ||||| Sbjct 9696 AA-ATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTTCAGCTTTCTTATA 9754 >seq221 Length=21533 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || || || ||||||| || || ||| || || ||||| Sbjct 10193 ACCACCTCTTAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGA 10134 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| |||| | || |||||||||||||||||||| |||||||| ||||| || ||||| Sbjct 10133 TAAAGTTCTACCGTCTTCCAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGG 10074 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| ||||| ||||| || ||||| |||| || || ||||| || Sbjct 10073 AATACCTTCTTTGTCTTGAATTTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 10014 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||||||||||||||||||| || || | || || ||||| Sbjct 10013 TTCTAAAGTAATGGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 9966 >seq22 Length=82586 Score = 150 bits (166), Expect = 4e-31 Identities = 327/483 (68%), Gaps = 15/483 (3%) Strand=Plus/Minus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAATAA 49651 |||||||||||||||||| | ||| ||||| |||| | || | |||||| Sbjct 9440 CATAAAATCAAATGGATTAGTAACATTGTAATACTTTTTATTTCCAAAGGCCACTAATAA 9381 Query 49652 TCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTT 49711 || ||| || |||||||||||||| || |||| || ||||||||||| |||||||| Sbjct 9380 TCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATAAAGA 9321 Query 49712 AAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcat 49771 | ||| | ||||| | | ||| ||| || || ||||| | |||| || | Sbjct 9320 TACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGATTTT 9261 Query 49772 aattatattattttttgataa--tttata-tttaatatgattcgcatatattaaACATGC 49828 | || |||| | || || ||||| ||||| || || ||| ||||| || Sbjct 9260 C--TCAATGATTTCTGGAGAAGGTTTATTCTTTAA----ATACGAGAATAACAAACAGGC 9207 Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888 | |||| || || | || ||||| | | || |||||||| ||| || |||||||| Sbjct 9206 ATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTGG 9147 Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAGAATAT 49945 ||| || || || || || | ||| || |||| ||||| ||| ||| |||| ||||| Sbjct 9146 CATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACT-GAAA--AATAT 9090 Query 49946 ACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATAT 50005 ||| || || ||||| || | | ||| | || ||| | || ||| || Sbjct 9089 ACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGAAT 9030 Query 50006 CCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 50065 ||| | || |||||||| ||||||| | |||| | || |||||||| ||||| ||||| Sbjct 9029 CCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTAAA 8970 Query 50066 TAA 50068 || Sbjct 8969 CAA 8967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984470186580300