Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23]
778 sequences; 14,044,856 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq241 199 8e-46
seq221 168 1e-36
seq22 150 4e-31
>seq241
Length=19529
Score = 199 bits (220), Expect = 8e-46
Identities = 512/780 (66%), Gaps = 12/780 (2%)
Strand=Plus/Plus
Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATAATA 49650
||| |||||||||||||| | ||| || || ||| | || | || | | || |
Sbjct 8981 CATGAAATCAAATGGATTAGTAACATTGTA-TACTTTCTTGTTACCTAAGGCCAACAACA 9039
Query 49651 ATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATT 49710
||||||| || || ||||||| ||||| |||| || | ||| ||||||||||| ||
Sbjct 9040 ATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCATACCCAACAAGG 9099
Query 49711 TAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatca 49770
| ||| | ||||| || | ||||| || | || ||||||| |||| ||
Sbjct 9100 ACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTTCAGTAATAATTT 9159
Query 49771 taattatattattttttgataatttatatttaatatgattcgcatatattaaACATGCAA 49830
| | | | | | ||| | | | || | |||| ||| | | |||||| ||||
Sbjct 9160 TTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGA---GCAAACAATAAACAAGCAA 9216
Query 49831 AATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCA 49890
| ||||| |||||||| || || || | || || || || ||||| || |||||||
Sbjct 9217 AGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCCTGGCA 9276
Query 49891 TTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCT 49950
|||| ||||||||||| | ||| || || || ||||| || | |||||| ||||| |
Sbjct 9277 TTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAGAAAATACCTT 9336
Query 49951 CGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAAT 50010
| || ||||| || | || |||| | ||| ||| || ||||||| ||||| |
Sbjct 9337 CAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATCTTGAATCCATT 9396
Query 50011 TTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATT 50070
| |||||||| || ||||| |||| ||| | || ||||| | || || |||||||| |
Sbjct 9397 TGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCATTAAATAAGT 9456
Query 50071 CAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAAT 50130
|| ||| | ||||||||||| || |||| ||||
Sbjct 9457 AATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGTAGGTTTCTGAAT 9516
Query 50131 GTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAACTT 50190
| | |||||| ||||| || || ||| | | ||||| | | |||||||
Sbjct 9517 GAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGGGAAGTTGAACTT 9576
Query 50191 CGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATG 50250
| | |||| ||||| ||| || ||| |||||||||||||| || ||||| ||||
Sbjct 9577 CAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAGCAGCGAAAAATG 9636
Query 50251 CTAAAACGTATTTA-ATAAAATGTTTTTCATTATCTTTTAAATT----TTCCCAAGATTC 50305
| || || | | | | ||||| | ||||||| || || || || |||| || |
Sbjct 9637 CCAATAC-TCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTTATTCCAGTCATCC 9695
Query 50306 AAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATA 50365
|| ||| || ||||| | |||||| ||||| || || ||| | | ||| |||||
Sbjct 9696 AA-ATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTTCAGCTTTCTTATA 9754
>seq221
Length=21533
Score = 168 bits (186), Expect = 1e-36
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||||||||| | | || || || || ||||||| || || ||| || || |||||
Sbjct 10193 ACCACCTCTTAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGA 10134
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
||| |||| | || |||||||||||||||||||| |||||||| ||||| || |||||
Sbjct 10133 TAAAGTTCTACCGTCTTCCAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGG 10074
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| |||||||| ||||| ||||| || ||||| |||| || || ||||| ||
Sbjct 10073 AATACCTTCTTTGTCTTGAATTTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 10014
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| ||||||||||||||||||||| || || | || || |||||
Sbjct 10013 TTCTAAAGTAATGGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 9966
>seq22
Length=82586
Score = 150 bits (166), Expect = 4e-31
Identities = 327/483 (68%), Gaps = 15/483 (3%)
Strand=Plus/Minus
Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAATAA 49651
|||||||||||||||||| | ||| ||||| |||| | || | ||||||
Sbjct 9440 CATAAAATCAAATGGATTAGTAACATTGTAATACTTTTTATTTCCAAAGGCCACTAATAA 9381
Query 49652 TCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTT 49711
|| ||| || |||||||||||||| || |||| || ||||||||||| ||||||||
Sbjct 9380 TCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATAAAGA 9321
Query 49712 AAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcat 49771
| ||| | ||||| | | ||| ||| || || ||||| | |||| || |
Sbjct 9320 TACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGATTTT 9261
Query 49772 aattatattattttttgataa--tttata-tttaatatgattcgcatatattaaACATGC 49828
| || |||| | || || ||||| ||||| || || ||| ||||| ||
Sbjct 9260 C--TCAATGATTTCTGGAGAAGGTTTATTCTTTAA----ATACGAGAATAACAAACAGGC 9207
Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888
| |||| || || | || ||||| | | || |||||||| ||| || ||||||||
Sbjct 9206 ATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTGG 9147
Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAGAATAT 49945
||| || || || || || | ||| || |||| ||||| ||| ||| |||| |||||
Sbjct 9146 CATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACT-GAAA--AATAT 9090
Query 49946 ACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATAT 50005
||| || || ||||| || | | ||| | || ||| | || ||| ||
Sbjct 9089 ACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGAAT 9030
Query 50006 CCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 50065
||| | || |||||||| ||||||| | |||| | || |||||||| ||||| |||||
Sbjct 9029 CCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTAAA 8970
Query 50066 TAA 50068
||
Sbjct 8969 CAA 8967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984470186580300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |