Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq22 203 6e-47 seq241 196 9e-45 seq221 187 5e-42 >seq22 Length=82586 Score = 203 bits (224), Expect = 6e-47 Identities = 376/545 (69%), Gaps = 15/545 (3%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| ||||||||| | ||||| || || || ||||| || | ||||| || Sbjct 9502 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAATGAGATATTT 9443 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAAT 38951 | |||||||||||||||||| | ||| ||||| |||| | || | |||| Sbjct 9442 TCCATAAAATCAAATGGATTAGTAACATTGTAATACTTTTTATTTCCAAAGGCCACTAAT 9383 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAAT 39011 |||| ||| || |||||||||||||| || |||| || ||||||||||| |||||||| Sbjct 9382 AATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATAAA 9323 Query 39012 TTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc 39071 | ||| | ||||| | | ||| ||| || || ||||| | |||| || Sbjct 9322 GATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGAT- 9264 Query 39072 ataattatattattttttgataa--ttta-tatttaatatgattcgcatataGTAAACAT 39128 | | || |||| | || || |||| | ||||| || || ||| ||||| Sbjct 9263 -TTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAA----ATACGAGAATAACAAACAG 9209 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 ||| ||||||| || | |||||||| | | || |||||||| ||| || |||||| Sbjct 9208 GCATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCT 9149 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAGAAT 39245 ||||| || || || || || | ||| || |||| ||||| ||| ||| |||| ||| Sbjct 9148 GGCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACT-GAAA--AAT 9092 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA 39305 ||||| || || ||||| || | | ||| | || ||| | || ||| | Sbjct 9091 ATACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGA 9032 Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365 ||||| | ||||||||||| ||||||| | |||| | || |||||||| ||||| ||| Sbjct 9031 ATCCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTA 8972 Query 39366 AATAA 39370 || || Sbjct 8971 AACAA 8967 >seq241 Length=19529 Score = 196 bits (216), Expect = 9e-45 Identities = 370/541 (68%), Gaps = 5/541 (1%) Strand=Plus/Plus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 ||||||||| || |||||| ||||||| || || || || || || | || || || Sbjct 8918 TTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAAGAAATGTT 8977 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATA 38949 | ||| |||||||||||||| | ||| || || ||| | || | || | | | Sbjct 8978 TTCCATGAAATCAAATGGATTAGTAACATTGTA-TACTTTCTTGTTACCTAAGGCCAACA 9036 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 | |||||||| || || ||||||| ||||| |||| || | ||| ||||||||||| | Sbjct 9037 ACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCATACCCAACA 9096 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | | ||| | ||||| || | ||||| || | || ||||||| |||| | Sbjct 9097 AGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTTCAGTAATAA 9156 Query 39070 tcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATG 39129 | | | | | | | ||| | | | || | |||| ||| | | |||||| | Sbjct 9157 TTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGA---GCAAACAATAAACAAG 9213 Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 39189 |||| || || ||||||||||| || || | || || || || ||||| || |||| Sbjct 9214 CAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCCTG 9273 Query 39190 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATAC 39249 ||||||| ||||||||||| | ||| || || || ||||| || | |||||| |||| Sbjct 9274 GCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAGAAAATAC 9333 Query 39250 CCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCC 39309 | || || ||||| || | || |||| | ||| ||| || ||||||| ||||| Sbjct 9334 CTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATCTTGAATCC 9393 Query 39310 AATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATA 39369 | || || ||||| || ||||| |||| ||| | || ||||| | || || ||||||| Sbjct 9394 ATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCATTAAATA 9453 Query 39370 A 39370 | Sbjct 9454 A 9454 >seq221 Length=21533 Score = 187 bits (206), Expect = 5e-42 Identities = 183/236 (78%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || || ||||||| || || || || Sbjct 10201 TTCTTACCACCACCTCTTAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTG 10142 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || ||||||| || |||| ||||||||||||||||||||||||||||| |||||| Sbjct 10141 TAGTCAGATAAAGTTCTACCGTCTTCCAATTGTTTACCAGCAAAAATTAATCTTTGTTGG 10082 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 || ||||| || |||||||| ||||| ||||| || ||||| ||||| || || Sbjct 10081 TCTGGTGGAATACCTTCTTTGTCTTGAATTTTGGACTTGACATTGTCAATAGTGTCAGAA 10022 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||||| ||||||||||||||||||||| || || | ||| || ||||| Sbjct 10021 GATTCAACTTCTAAAGTAATGGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 9966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905127197552400