Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23]
778 sequences; 14,044,856 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq22 203 6e-47
seq241 196 9e-45
seq221 187 5e-42
>seq22
Length=82586
Score = 203 bits (224), Expect = 6e-47
Identities = 376/545 (69%), Gaps = 15/545 (3%)
Strand=Plus/Minus
Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891
|||||||| ||||||||| | ||||| || || || ||||| || | ||||| ||
Sbjct 9502 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAATGAGATATTT 9443
Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAAT 38951
| |||||||||||||||||| | ||| ||||| |||| | || | ||||
Sbjct 9442 TCCATAAAATCAAATGGATTAGTAACATTGTAATACTTTTTATTTCCAAAGGCCACTAAT 9383
Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAAT 39011
|||| ||| || |||||||||||||| || |||| || ||||||||||| ||||||||
Sbjct 9382 AATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATAAA 9323
Query 39012 TTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc 39071
| ||| | ||||| | | ||| ||| || || ||||| | |||| ||
Sbjct 9322 GATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGAT- 9264
Query 39072 ataattatattattttttgataa--ttta-tatttaatatgattcgcatataGTAAACAT 39128
| | || |||| | || || |||| | ||||| || || ||| |||||
Sbjct 9263 -TTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAA----ATACGAGAATAACAAACAG 9209
Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188
||| ||||||| || | |||||||| | | || |||||||| ||| || ||||||
Sbjct 9208 GCATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCT 9149
Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAGAAT 39245
||||| || || || || || | ||| || |||| ||||| ||| ||| |||| |||
Sbjct 9148 GGCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACT-GAAA--AAT 9092
Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA 39305
||||| || || ||||| || | | ||| | || ||| | || ||| |
Sbjct 9091 ATACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGA 9032
Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365
||||| | ||||||||||| ||||||| | |||| | || |||||||| ||||| |||
Sbjct 9031 ATCCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTA 8972
Query 39366 AATAA 39370
|| ||
Sbjct 8971 AACAA 8967
>seq241
Length=19529
Score = 196 bits (216), Expect = 9e-45
Identities = 370/541 (68%), Gaps = 5/541 (1%)
Strand=Plus/Plus
Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890
||||||||| || |||||| ||||||| || || || || || || | || || ||
Sbjct 8918 TTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAAGAAATGTT 8977
Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATA 38949
| ||| |||||||||||||| | ||| || || ||| | || | || | | |
Sbjct 8978 TTCCATGAAATCAAATGGATTAGTAACATTGTA-TACTTTCTTGTTACCTAAGGCCAACA 9036
Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009
| |||||||| || || ||||||| ||||| |||| || | ||| ||||||||||| |
Sbjct 9037 ACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCATACCCAACA 9096
Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069
| | ||| | ||||| || | ||||| || | || ||||||| |||| |
Sbjct 9097 AGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTTCAGTAATAA 9156
Query 39070 tcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATG 39129
| | | | | | | ||| | | | || | |||| ||| | | |||||| |
Sbjct 9157 TTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGA---GCAAACAATAAACAAG 9213
Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 39189
|||| || || ||||||||||| || || | || || || || ||||| || ||||
Sbjct 9214 CAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCCTG 9273
Query 39190 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATAC 39249
||||||| ||||||||||| | ||| || || || ||||| || | |||||| ||||
Sbjct 9274 GCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAGAAAATAC 9333
Query 39250 CCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCC 39309
| || || ||||| || | || |||| | ||| ||| || ||||||| |||||
Sbjct 9334 CTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATCTTGAATCC 9393
Query 39310 AATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATA 39369
| || || ||||| || ||||| |||| ||| | || ||||| | || || |||||||
Sbjct 9394 ATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCATTAAATA 9453
Query 39370 A 39370
|
Sbjct 9454 A 9454
>seq221
Length=21533
Score = 187 bits (206), Expect = 5e-42
Identities = 183/236 (78%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893
||| || ||||||||| | || || || || || ||||||| || || || ||
Sbjct 10201 TTCTTACCACCACCTCTTAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTG 10142
Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953
|| || ||||||| || |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 10141 TAGTCAGATAAAGTTCTACCGTCTTCCAATTGTTTACCAGCAAAAATTAATCTTTGTTGG 10082
Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013
|| ||||| || |||||||| ||||| ||||| || ||||| ||||| || ||
Sbjct 10081 TCTGGTGGAATACCTTCTTTGTCTTGAATTTTGGACTTGACATTGTCAATAGTGTCAGAA 10022
Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| ||||||| ||||||||||||||||||||| || || | ||| || |||||
Sbjct 10021 GATTCAACTTCTAAAGTAATGGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 9966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905127197552400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |