Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23]
778 sequences; 14,044,856 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq65 111 1e-19
seq30 105 6e-18
seq221 82.4 6e-11
>seq65
Length=45114
Score = 111 bits (122), Expect = 1e-19
Identities = 370/571 (65%), Gaps = 15/571 (3%)
Strand=Plus/Minus
Query 130538 ATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATG 130597
||||| | ||||| |||||||||||||| || | || || ||||||||||||| ||
Sbjct 20318 ATGTTTAATGATTGAGATTGATCAATAAATGCAGCTCTATCAGCAGCCATGTCGATAATA 20259
Query 130598 GTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGC 130657
|| | | || ||||| | |||||||| | || |||| | | || |||
Sbjct 20258 TGCTTTTGTGAGATTTCCCAGACAGTCTTGTACAATGCCTTAATTTCATCAGGAATGTTT 20199
Query 130658 GCAATCGATTGAACGCTACCGTTGTTGGCTATAAT--TTCGTTGCGCATACTTTTATCGT 130715
| | | ||||| ||||||||| || ||||| | | || | ||| | ||
Sbjct 20198 GGCAAAGCTTGAATAGAACCGTTGTTAGCAATAATACTACTTTTC--ATAGCATCATTCC 20141
Query 130716 ACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAG 130775
| | || | | || | ||| || | ||||| ||| | |||||||| || || |
Sbjct 20140 AGACACCCAAATCAACCAAATCCTTCAACAAATATGGATTGACAATTTGAAATTCTCCTG 20081
Query 130776 CCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGA 130835
| | || | ||| ||||||||| ||| | ||||| || | || ||||| || |
Sbjct 20080 CTAACACTCTTCTGGAGTAAATGTTAGAAGTGTATGGTTCGAAACACTCATTGTTACCCA 20021
Query 130836 ATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGT 130895
| ||||||| ||||| || || ||||| || ||||||| || || | | ||| |
Sbjct 20020 AAATTTGTGATGTAGAAGCAGTAGGCATTGGAGCAACTAATAAGGAGTTTCTCATACCAT 19961
Query 130896 GCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGT 130955
|| | | | ||| | || ||| |||||||||||||| || ||||| |||
Sbjct 19960 GCTTAGCCAAATTTTGTTTTAATGTATCCCAATCCCATAATTCAGTTGGTTT---TCTGT 19904
Query 130956 TCCACATATCAAATTGTAGTATGCCTTTACTGGC--GGGA--CTGGATTCGAACGATTCG 131011
|||| | |||||| |||| || |||| | ||| |||| |||||| | | ||||
Sbjct 19903 TCCATAAATCAAACTGTAATAAACCTTGAGAGGCAGGGGAGCCTGGAT----AAGTTTCG 19848
Query 131012 TAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTT 131071
||| ||||| | ||||| || |||||| | ||| | | ||||| ||
Sbjct 19847 TAGGCACCTTCTTCTTTAGCCAATTCAACAGAAGCTTCAACAGCAGCATGGTAAATAGTC 19788
Query 131072 TCGGCAATTTGTTTATTTAATTGTTTCGCTT 131102
||| |||||| | ||||||| | | ||||
Sbjct 19787 TCGAAAATTTGAATGTTTAATTCTCTGGCTT 19757
>seq30
Length=68702
Score = 105 bits (116), Expect = 6e-18
Identities = 200/291 (69%), Gaps = 5/291 (2%)
Strand=Plus/Minus
Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707
|| || ||||||||||| || || | |||||| | || |||| |||||||| | | |
Sbjct 1427 ACACGTTTCATAAACAAGTCGGGTATCCATAATCCATAAAACAAATCTCTAGTTCTCATT 1368
Query 131708 TCTTCTGTACCCATAAtttttt-tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGG 131766
||||| | ||| | ||||||| ||| | ||| | || ||||| || ||||||| ||
Sbjct 1367 TCTTC-ATTCCCGTGATTTTTTCTCATTTCTAAGATATCAAAAATATCACCATGCCATGG 1309
Query 131767 TTCCAAATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAAC 131823
||| | ||| | || | ||| ||| || ||| || ||||||| |||| | |
Sbjct 1308 TTCTATATATATGGCAAATGCTCCTGGACGTTTACCCCCACCTTGATCGACATATCTTGC 1249
Query 131824 CATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTT 131883
| || ||||| || ||||||||||| | || ||||| | | ||||||||||
Sbjct 1248 AGTATTATTGTAAACACGCAACATGGGTACTAACCCGTTTGAACTACCATTGGTGCCAGC 1189
Query 131884 AATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC 131934
||| || ||||||| ||| || ||||| || | | || || |||||
Sbjct 1188 AATATACGCACCATTGGATCTAATATTGTGCACATGAATACCTATTCCTCC 1138
>seq221
Length=21533
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGT 27093
||| ||||| || || ||||| || ||||| || |||||||| | | | ||| | |||
Sbjct 10178 CAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTAC-CGT 10120
Query 27094 CTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTAT 27153
|||| | |||||||| || |||| | | ||||| || || || | ||| ||||| |
Sbjct 10119 CTTCCAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGT 10060
Query 27154 CGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213
| || ||| || | | || | |||||| | | ||||||||||| ||| || |
Sbjct 10059 CTTGAATTTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATGG 10000
Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| || || | || || || || ||||||||
Sbjct 9999 TTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 9966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424930370825136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |