Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23]
778 sequences; 14,044,856 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq65 205 1e-47
seq241 114 2e-20
seq6 111 2e-19
seq240 89.7 6e-13
>seq65
Length=45114
Score = 205 bits (226), Expect = 1e-47
Identities = 854/1324 (65%), Gaps = 43/1324 (3%)
Strand=Plus/Minus
Query 110669 TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGT 110728
|||||||| ||| || ||||| | |||||| ||| ||||| | |||||||||
Sbjct 20102 TTGACAATTTGAAATTCTCCTGCTAACACTCTTCTGGAGTAAATGTTAGAAGTGTATGGT 20043
Query 110729 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 110788
|| || || ||||| |||||||| ||||||| || || || || |||||||| || |
Sbjct 20042 TCGAAACACTCATTGTTACCCAAAATTTGTGATGTAGAAGCAGTAGGCATTGGAGCAACT 19983
Query 110789 AAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG--T 110846
|| | ||| | | ||| | || | || || | |||||| || |
Sbjct 19982 AATAAGGAGTTTCTCATACCATGCTTAGCCAAATTTTGTTTTAATGTATCCCAATCCCAT 19923
Query 110847 AGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAG 110906
| || || ||||||| |||| | | |||||||| | | ||||| || || || |
Sbjct 19922 AATTCAG-TTGGTTTTCTGTTCC-ATAAATCAAACTGTAATAAACCTTGAGAGGCAGGGG 19865
Query 110907 AACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCA-CAGCTCGCCTCCAGG 110965
| || | | ||||| |||| ||||| ||| |||||||||| ||| || || |
Sbjct 19864 AGCCTGGATAAGTTTCGTAGGCACCTTCTTCTTTAGCCAATTCAACAGAA-GCTTCAACA 19806
Query 110966 GATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCA 111025
| || || || || || || || || || || | || ||||||| | || |||
Sbjct 19805 GCAGCATGGTAAATAGTCTCGAAAATTTGAATGTTTAATTCTCTGGCTTCTTGGGAGTCA 19746
Query 111026 AATGCGTAGCGGCACAAA---ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082
|||| ||| | ||| ||||| |||| || | |||||||||||||||| ||||
Sbjct 19745 AATG-GTAAT--CTCAATTCCATAAAGGCATCAGCCAAACCTTGAACACCCAAAGCAATT 19689
Query 111083 GGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTCAA 111140
|||||||||| |||||| || |||||| || ||| ||| || ||| || | |||||
Sbjct 19688 GGTCTGTGTCTCATATTTGATCTTTCG-GC-TTCTGGAACTGGGTAATGGTTGCGGTCAA 19631
Query 111141 TGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA----- 111195
| |||| ||| | || ||| || | ||| |||| ||||| | || ||| |
Sbjct 19630 TAACTCTGTTCAAGTTACGGGTGACTACCTTGGTGACATCATGTAACTTATCAAAGTTGT 19571
Query 111196 ATCAA----AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 111251
| ||| | | || || ||| | ||| | ||| | || || || ||||| |
Sbjct 19570 ACCAAGTATTACTTTGA-TCGCTT--TCAACAAATGATGGTAAAGCAATGGAGGCCAAGT 19514
Query 111252 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAAC 111311
| |||||||| ||||| | | | || || | |||||| |||||||||||||
Sbjct 19513 TACAAACAGCGACTTCATCTGGAGCAGAATATTCAACAATTTCACAACATAAGTTGGAAG 19454
Query 111312 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCA 111371
||||| | ||||| ||||||||||| || ||||| || | ||| ||||| | ||
Sbjct 19453 ATTTAATAATACCCAAGTTCTTTTGGTTGGATTTGTTGTTACATGAATCTTTGTACAACA 19394
Query 111372 TGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCT 111430
| | || || ||||| || || || | | | ||||| | ||| || | | | ||
Sbjct 19393 TAAATGGAGTACCCGTTTCTGTTTGGGCTCCCAAGATAGCGTACCACAATTTTTGGGCCT 19334
Query 111431 GGTACAATGGCGT---TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAAC 111487
| |||| | || | || || ||||| | || || | |||| ||
Sbjct 19333 TG----ATGGTCTGTCTGCCACGGTTTTCTTTTTCGTATCTGGTATATAATTCTTCGAAT 19278
Query 111488 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 111547
|| ||||| | || | | |||||| |||| | ||| |||| | || ||| | |
Sbjct 19277 TCGTCACCGTAAACATCAGCCAAACCTGGGGCCTCATTTGGTGAGAACAAAGTCCAATCA 19218
Query 111548 CCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 111607
|| || || || | |||||||| | |||||||||||| | | || || | ||||
Sbjct 19217 CCGTTTTGTTCGACTCTTTTCATGAACAAGTCTGGAATCCATAAAGCTGGGAACAAATCT 19158
Query 111608 CT-ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATC 111666
|| | | || ||||| | ||| || || || | |||| ||| || | ||| ||
Sbjct 19157 CTGGCTCTGA-TTTCTTCTTTACCATGATTCTTTCTGATGTCAATGAAATCAAAGATGTC 19099
Query 111667 CGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGAT 111722
||||||||| || | || | || | | || |||| | ||| ||||||
Sbjct 19098 ACTGTGCCATGGTTCTAAGTACAAGGCAAAGGCACCAGGTCTTTTG-TTACCACCTTGAT 19040
Query 111723 TTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGAC 111782
||||| || || ||| || || || | | ||||||||||||||||| || ||
Sbjct 19039 CAACATAACGTGCAGTGTTATTGAACACTCTTACCATTGGAATAATACCATTAGAAGTAC 18980
Query 111783 CATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATAC 111842
|||| || || ||| || | | | | | | ||||| || | ||||| |
Sbjct 18979 CATTGGTACCAGCAATGTAAGCACCAGTAGAACGAATGTTGTGGATATGTAAACCAATCC 18920
Query 111843 CCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 111902
| || || | ||||| || |||||| | | ||| |||| ||||| | || |
Sbjct 18919 CTCCTGCACTTTTTGAAATCAAAGCACACGATTTTAAAGTATCATATATACCTTCAATAG 18860
Query 111903 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCAT 111962
| || ||||| | || | | |||||| ||||| ||||||||||||||||||||||
Sbjct 18859 AATCATCCTTCATAGCAAGCAAGAAGCATGAAGACATTTGCGGTCTTGGTGTACCAGCAT 18800
Query 111963 TGAA 111966
||||
Sbjct 18799 TGAA 18796
>seq241
Length=19529
Score = 114 bits (126), Expect = 2e-20
Identities = 355/536 (66%), Gaps = 39/536 (7%)
Strand=Plus/Plus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| | ||| ||||||| | |||| | || |||||||| | |||
Sbjct 9213 GCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCCT 9272
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777
||||| | ||| | ||| |||||||| | |||| ||| ||||| || ||||| ||
Sbjct 9273 GGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCA-AATGAACCACTAAAGAAAAT 9331
Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATC-- 122834
||| || || ||||| |||| | | ||| | | | || ||| ||||
Sbjct 9332 ACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATA----CAAGGCTTCATCATCTT 9387
Query 122835 -AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGG--ATGGC 122891
|| |||||| || ||||| | || ||||| | ||||||||| | | |||| |||||
Sbjct 9388 GAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATA--TTGGCAATGGC 9445
Query 122892 TTCAAATAACT-----GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTT 122946
| |||||| | ||||||| || ||| || ||||| | ||||| |||
Sbjct 9446 ATTAAATAAGTAATCGGCTTCTTG--AGG---ATCTTTTATGTAAGTTTCAATTAATAAA 9500
Query 122947 GAATATGTTTCGCCATGAACCATTTC-ATTATGGCATTGATATGCGTAGAATGAGCGCGC 123005
|| || ||||| ||||| |||| || ||| | || | |||||||||| ||
Sbjct 9501 GAGTAGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAAC-CGTAGAATGATTTGGC 9559
Query 123006 TTCGCTTATCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATC 123065
|||| | ||||| ||| || || || | | | | || ||| |||||| |||||
Sbjct 9560 TTCGGGAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATC 9619
Query 123066 GGACCCAGCAAAGAATGCCAGGATGTACTTTATG-----AATTTCTTTTCATTTTCATTC 123120
|| |||| || ||||||| |||| || ||| ||||| |||||||||||
Sbjct 9620 AGAAGCAGCGAAAAATGCCAA----TACTCTAGAGACAAAATATCTTT-CATTTTCATTC 9674
Query 123121 A---GGGTCTTCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173
| | | |||||||| || | |||||| |||||| | |||||| || |||||
Sbjct 9675 AATTTGTTATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCA 9730
>seq6
Length=122245
Score = 111 bits (122), Expect = 2e-19
Identities = 110/141 (78%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663
||||| |||||||||||||| || || | |||||||||||||||||| | ||||||
Sbjct 18139 TATGGCCGTGTTGCACCACGTTCAGGATTGGCTGTGAAGCATGGTATTTCAACTGGTGCT 18198
Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723
||||||||||| |||| ||| |||||||| ||||| || | || |||||| | ||
Sbjct 18199 GGTGTTATTGACGCCGATTATCGTGGTGAAGTGAAAGTAGTCTTATTTAATCACAGTGAT 18258
Query 164724 AAAGACTTTG-AGGTAAAGAA 164743
||||| || | | |||||||
Sbjct 18259 AAAGATTTCGAAATTAAAGAA 18279
>seq240
Length=19657
Score = 89.7 bits (98), Expect = 6e-13
Identities = 217/325 (67%), Gaps = 9/325 (3%)
Strand=Plus/Plus
Query 11535 TGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTG 11594
||||||| |||||||| || | |||||||| | |||| ||| | |||||||| |
Sbjct 8570 TGTCAAACCCATCCATTTCTACCAACAATTGATTCAATGTTGTTTCACGTTCATCATTGG 8629
Query 11595 C-----TGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAA 11649
| |||||| || | | | ||||| || || | ||||| || ||||||| ||
Sbjct 8630 CACCAGTGGCATTCCCCTTGGAA--CGTTGTTTACCAATAGCATCGATTTCATCAACAAA 8687
Query 11650 GACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACC 11709
||||| | || |||||| || || | | ||| | ||| ||||| || || ||
Sbjct 8688 CACAATCGAAGGGGCATTTTCACGTGCAGTCTTAAATAAATCACGAACTCTAGATGCTCC 8747
Query 11710 CACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTG 11768
|||||||||||||| || ||||| | || |||| || | | |||||| || ||
Sbjct 8748 AACACCAACAAACATTTCTACAAATTCTGACCCAGA-AACAGAGTAGAATGGAACTCCTG 8806
Query 11769 ATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAA 11828
|||||| || | || ||| || | || || || || ||||| ||| | | ||
Sbjct 8807 CTTCACCAGCAGTTGCCTTGGCAAGTAAAGTTTTACCTGTCCCTGGAGGACCAGATAAAA 8866
Query 11829 GGGCGCCTCGGGGGATCTTGGCACC 11853
|| || || ||||| || |||||
Sbjct 8867 TAGCCCCACGAGGGATTTTTGCACC 8891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628025892388800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |