Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq65 205 1e-47 seq241 114 2e-20 seq6 111 2e-19 seq240 89.7 6e-13 >seq65 Length=45114 Score = 205 bits (226), Expect = 1e-47 Identities = 854/1324 (65%), Gaps = 43/1324 (3%) Strand=Plus/Minus Query 110669 TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGT 110728 |||||||| ||| || ||||| | |||||| ||| ||||| | ||||||||| Sbjct 20102 TTGACAATTTGAAATTCTCCTGCTAACACTCTTCTGGAGTAAATGTTAGAAGTGTATGGT 20043 Query 110729 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 110788 || || || ||||| |||||||| ||||||| || || || || |||||||| || | Sbjct 20042 TCGAAACACTCATTGTTACCCAAAATTTGTGATGTAGAAGCAGTAGGCATTGGAGCAACT 19983 Query 110789 AAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG--T 110846 || | ||| | | ||| | || | || || | |||||| || | Sbjct 19982 AATAAGGAGTTTCTCATACCATGCTTAGCCAAATTTTGTTTTAATGTATCCCAATCCCAT 19923 Query 110847 AGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAG 110906 | || || ||||||| |||| | | |||||||| | | ||||| || || || | Sbjct 19922 AATTCAG-TTGGTTTTCTGTTCC-ATAAATCAAACTGTAATAAACCTTGAGAGGCAGGGG 19865 Query 110907 AACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCA-CAGCTCGCCTCCAGG 110965 | || | | ||||| |||| ||||| ||| |||||||||| ||| || || | Sbjct 19864 AGCCTGGATAAGTTTCGTAGGCACCTTCTTCTTTAGCCAATTCAACAGAA-GCTTCAACA 19806 Query 110966 GATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCA 111025 | || || || || || || || || || || | || ||||||| | || ||| Sbjct 19805 GCAGCATGGTAAATAGTCTCGAAAATTTGAATGTTTAATTCTCTGGCTTCTTGGGAGTCA 19746 Query 111026 AATGCGTAGCGGCACAAA---ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 |||| ||| | ||| ||||| |||| || | |||||||||||||||| |||| Sbjct 19745 AATG-GTAAT--CTCAATTCCATAAAGGCATCAGCCAAACCTTGAACACCCAAAGCAATT 19689 Query 111083 GGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTCAA 111140 |||||||||| |||||| || |||||| || ||| ||| || ||| || | ||||| Sbjct 19688 GGTCTGTGTCTCATATTTGATCTTTCG-GC-TTCTGGAACTGGGTAATGGTTGCGGTCAA 19631 Query 111141 TGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA----- 111195 | |||| ||| | || ||| || | ||| |||| ||||| | || ||| | Sbjct 19630 TAACTCTGTTCAAGTTACGGGTGACTACCTTGGTGACATCATGTAACTTATCAAAGTTGT 19571 Query 111196 ATCAA----AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 111251 | ||| | | || || ||| | ||| | ||| | || || || ||||| | Sbjct 19570 ACCAAGTATTACTTTGA-TCGCTT--TCAACAAATGATGGTAAAGCAATGGAGGCCAAGT 19514 Query 111252 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAAC 111311 | |||||||| ||||| | | | || || | |||||| ||||||||||||| Sbjct 19513 TACAAACAGCGACTTCATCTGGAGCAGAATATTCAACAATTTCACAACATAAGTTGGAAG 19454 Query 111312 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCA 111371 ||||| | ||||| ||||||||||| || ||||| || | ||| ||||| | || Sbjct 19453 ATTTAATAATACCCAAGTTCTTTTGGTTGGATTTGTTGTTACATGAATCTTTGTACAACA 19394 Query 111372 TGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCT 111430 | | || || ||||| || || || | | | ||||| | ||| || | | | || Sbjct 19393 TAAATGGAGTACCCGTTTCTGTTTGGGCTCCCAAGATAGCGTACCACAATTTTTGGGCCT 19334 Query 111431 GGTACAATGGCGT---TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAAC 111487 | |||| | || | || || ||||| | || || | |||| || Sbjct 19333 TG----ATGGTCTGTCTGCCACGGTTTTCTTTTTCGTATCTGGTATATAATTCTTCGAAT 19278 Query 111488 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 111547 || ||||| | || | | |||||| |||| | ||| |||| | || ||| | | Sbjct 19277 TCGTCACCGTAAACATCAGCCAAACCTGGGGCCTCATTTGGTGAGAACAAAGTCCAATCA 19218 Query 111548 CCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 111607 || || || || | |||||||| | |||||||||||| | | || || | |||| Sbjct 19217 CCGTTTTGTTCGACTCTTTTCATGAACAAGTCTGGAATCCATAAAGCTGGGAACAAATCT 19158 Query 111608 CT-ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATC 111666 || | | || ||||| | ||| || || || | |||| ||| || | ||| || Sbjct 19157 CTGGCTCTGA-TTTCTTCTTTACCATGATTCTTTCTGATGTCAATGAAATCAAAGATGTC 19099 Query 111667 CGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGAT 111722 ||||||||| || | || | || | | || |||| | ||| |||||| Sbjct 19098 ACTGTGCCATGGTTCTAAGTACAAGGCAAAGGCACCAGGTCTTTTG-TTACCACCTTGAT 19040 Query 111723 TTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGAC 111782 ||||| || || ||| || || || | | ||||||||||||||||| || || Sbjct 19039 CAACATAACGTGCAGTGTTATTGAACACTCTTACCATTGGAATAATACCATTAGAAGTAC 18980 Query 111783 CATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATAC 111842 |||| || || ||| || | | | | | | ||||| || | ||||| | Sbjct 18979 CATTGGTACCAGCAATGTAAGCACCAGTAGAACGAATGTTGTGGATATGTAAACCAATCC 18920 Query 111843 CCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 111902 | || || | ||||| || |||||| | | ||| |||| ||||| | || | Sbjct 18919 CTCCTGCACTTTTTGAAATCAAAGCACACGATTTTAAAGTATCATATATACCTTCAATAG 18860 Query 111903 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCAT 111962 | || ||||| | || | | |||||| ||||| |||||||||||||||||||||| Sbjct 18859 AATCATCCTTCATAGCAAGCAAGAAGCATGAAGACATTTGCGGTCTTGGTGTACCAGCAT 18800 Query 111963 TGAA 111966 |||| Sbjct 18799 TGAA 18796 >seq241 Length=19529 Score = 114 bits (126), Expect = 2e-20 Identities = 355/536 (66%), Gaps = 39/536 (7%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| ||||||| | |||| | || |||||||| | ||| Sbjct 9213 GCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCCT 9272 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | ||| | ||| |||||||| | |||| ||| ||||| || ||||| || Sbjct 9273 GGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCA-AATGAACCACTAAAGAAAAT 9331 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATC-- 122834 ||| || || ||||| |||| | | ||| | | | || ||| |||| Sbjct 9332 ACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATA----CAAGGCTTCATCATCTT 9387 Query 122835 -AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGG--ATGGC 122891 || |||||| || ||||| | || ||||| | ||||||||| | | |||| ||||| Sbjct 9388 GAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATA--TTGGCAATGGC 9445 Query 122892 TTCAAATAACT-----GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTT 122946 | |||||| | ||||||| || ||| || ||||| | ||||| ||| Sbjct 9446 ATTAAATAAGTAATCGGCTTCTTG--AGG---ATCTTTTATGTAAGTTTCAATTAATAAA 9500 Query 122947 GAATATGTTTCGCCATGAACCATTTC-ATTATGGCATTGATATGCGTAGAATGAGCGCGC 123005 || || ||||| ||||| |||| || ||| | || | |||||||||| || Sbjct 9501 GAGTAGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAAC-CGTAGAATGATTTGGC 9559 Query 123006 TTCGCTTATCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATC 123065 |||| | ||||| ||| || || || | | | | || ||| |||||| ||||| Sbjct 9560 TTCGGGAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATC 9619 Query 123066 GGACCCAGCAAAGAATGCCAGGATGTACTTTATG-----AATTTCTTTTCATTTTCATTC 123120 || |||| || ||||||| |||| || ||| ||||| ||||||||||| Sbjct 9620 AGAAGCAGCGAAAAATGCCAA----TACTCTAGAGACAAAATATCTTT-CATTTTCATTC 9674 Query 123121 A---GGGTCTTCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 | | | |||||||| || | |||||| |||||| | |||||| || ||||| Sbjct 9675 AATTTGTTATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCA 9730 >seq6 Length=122245 Score = 111 bits (122), Expect = 2e-19 Identities = 110/141 (78%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 ||||| |||||||||||||| || || | |||||||||||||||||| | |||||| Sbjct 18139 TATGGCCGTGTTGCACCACGTTCAGGATTGGCTGTGAAGCATGGTATTTCAACTGGTGCT 18198 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 ||||||||||| |||| ||| |||||||| ||||| || | || |||||| | || Sbjct 18199 GGTGTTATTGACGCCGATTATCGTGGTGAAGTGAAAGTAGTCTTATTTAATCACAGTGAT 18258 Query 164724 AAAGACTTTG-AGGTAAAGAA 164743 ||||| || | | ||||||| Sbjct 18259 AAAGATTTCGAAATTAAAGAA 18279 >seq240 Length=19657 Score = 89.7 bits (98), Expect = 6e-13 Identities = 217/325 (67%), Gaps = 9/325 (3%) Strand=Plus/Plus Query 11535 TGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTG 11594 ||||||| |||||||| || | |||||||| | |||| ||| | |||||||| | Sbjct 8570 TGTCAAACCCATCCATTTCTACCAACAATTGATTCAATGTTGTTTCACGTTCATCATTGG 8629 Query 11595 C-----TGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAA 11649 | |||||| || | | | ||||| || || | ||||| || ||||||| || Sbjct 8630 CACCAGTGGCATTCCCCTTGGAA--CGTTGTTTACCAATAGCATCGATTTCATCAACAAA 8687 Query 11650 GACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACC 11709 ||||| | || |||||| || || | | ||| | ||| ||||| || || || Sbjct 8688 CACAATCGAAGGGGCATTTTCACGTGCAGTCTTAAATAAATCACGAACTCTAGATGCTCC 8747 Query 11710 CACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTG 11768 |||||||||||||| || ||||| | || |||| || | | |||||| || || Sbjct 8748 AACACCAACAAACATTTCTACAAATTCTGACCCAGA-AACAGAGTAGAATGGAACTCCTG 8806 Query 11769 ATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAA 11828 |||||| || | || ||| || | || || || || ||||| ||| | | || Sbjct 8807 CTTCACCAGCAGTTGCCTTGGCAAGTAAAGTTTTACCTGTCCCTGGAGGACCAGATAAAA 8866 Query 11829 GGGCGCCTCGGGGGATCTTGGCACC 11853 || || || ||||| || ||||| Sbjct 8867 TAGCCCCACGAGGGATTTTTGCACC 8891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628025892388800