Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq65 116 5e-21 seq30 114 2e-20 seq240 82.4 9e-11 >seq65 Length=45114 Score = 116 bits (128), Expect = 5e-21 Identities = 882/1402 (63%), Gaps = 55/1402 (4%) Strand=Plus/Minus Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 |||||||| || || ||||||||||||||||| ||||| | ||| || || || ||||| Sbjct 20051 GTGTATGGTTCGAAACACTCATTGTTACCCAAAATTTGTGATGTAGAAGCAGTAGGCATT 19992 Query 118254 GGTGCCA-TGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGAGAGCG 118310 || || | | | |||| ||| | | ||| | || || ||| || || | | Sbjct 19991 GGAGCAACTAATAAGGA-GTTTCTCATACCATGCTTAGCCAAATT--TTGTTTTAATGTA 19935 Query 118311 TCCCAGTCG--TAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368 ||||| || || || || ||| | | | ||| | ||||||||| | | ||||| Sbjct 19934 TCCCAATCCCATAATTCAG--TTGGTTTTCTGTTCCATAAATCAAACTGTAATAAACCTT 19877 Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC----G 118424 | || || || || || | | || || || | || || | | |||||||| | Sbjct 19876 GAGAGGCAGGGGAGCCTGGATAAGTTTCGTAGGCACCTTCTTCTTTAGCCAATTCAACAG 19817 Query 118425 GAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTG 118484 |||| || | || || || || || || || ||||| || || | | | || Sbjct 19816 AAGCT----TCAACAGCAGCATGGTAAATAGTCTCGAAAATTTGAATGTTTAATTCTCTG 19761 Query 118485 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 118544 || || | ||| ||||| | | || | ||||| |||| || | |||||| ||| Sbjct 19760 GCTTCTTGGGAGTCAAATGGTAATCTCAATTCCATAAAGGCATCAGCCAAACCTTGAACA 19701 Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTCCGAGCGGTCTCCA-CGGGATAAA 118602 || | ||||||| | ||||||||||| || ||| || || ||| | | || ||| Sbjct 19700 CCCAAAGCAATTGGTCTGTGTCTCATATTTGATCTTTCG-GCT-TCTGGAACTGGGTAAT 19643 Query 118603 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 118662 || | || ||||| || || | || |||||| ||||| |||| ||||| | || Sbjct 19642 GGTTGCGGTCAATAACTCTGTTCAAGTTACGGGTGACTACCTTGGTGACATCATGTAACT 19583 Query 118663 TTTCGTAATCAAAACTG---CGAGTCTCTTCATTGA---CAT---ACTTAGGAAGG---- 118709 | |||||| || | ||| | | | |||| | | || | || || Sbjct 19582 T------ATCAAAGTTGTACCAAGTAT-TACTTTGATCGCTTTCAACAAATGATGGTAAA 19530 Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 || || || |||| ||||| |||| | ||||| | ||| || || | |||||| Sbjct 19529 GCAATGGAGGCCAAGTTACAAACAGCGACTTCATCTGGAGCAGAATATTCAACAATTTCA 19470 Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 118829 || ||||| ||| ||||| | |||||||||||||| || || || ||||||| Sbjct 19469 CAACATAAGTTGGAAGATTTAATAATACCCAAGTTCTTTTGGTTGGATTTGTTGTTACAT 19410 Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 | ||| ||||| | ||| |||| || ||||| || ||||||| | ||||| | | Sbjct 19409 GAATCTTTGTACAACATAAATGGAGTACCCGTTTCTGTTTGGGCTCCCAAGATAGCGTAC 19350 Query 118890 CAGA---CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTG 118946 || | | ||| || | | || || | || |||| ||||| | || Sbjct 19349 CACAATTTTTGGGC--CTTG-ATGGTCTGTCTGCCACGGTTTTCTTTTTCGTATCTGGTA 19293 Query 118947 TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAG 119006 || | |||| || || ||||| | || | | ||||| |||| || ||| || Sbjct 19292 TATAATTCTTCGAATTCGTCACCGTAAACATCAGCCAAACCTGGGGCCTCATTTGGTGAG 19233 Query 119007 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 119066 || | || ||| | ||| | || || | |||||||| | |||||| ||||| | Sbjct 19232 AACAAAGTCCAATCACCGTTTTGTTCGACTCTTTTCATGAACAAGTCTGGAATCCATAAA 19173 Query 119067 GCCGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 119125 || | ||| | ||| | | | || |||||| | || ||||| | | || | Sbjct 19172 GCTGGGAACAAATCTCTGGCTCTGA-TTTCTTCTTTACCATGATTCTTTCTGATGTCAAT 19114 Query 119126 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCTTAC 119181 || || | ||| || |||||| ||||| | ||||| || | | ||| ||| Sbjct 19113 GAAATCAAAGATGTCACTGTGCCATGGTTCTAAGTACAAGGCAAAGGCACCAGGTCTTTT 19054 Query 119182 GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGA 119241 | |||| | || | ||||| | |||||| || || || | | ||||||||| | Sbjct 19053 G-TTACCACCTTGATCAACATAACGTGCAGTGTTATTGAACACTCTTACCATTGGAATAA 18995 Query 119242 TACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGA 119301 |||||| || ||||| || || ||| || | | | | | | ||||| Sbjct 18994 TACCATTAGAAGTACCATTGGTACCAGCAATGTAAGCACCAGTAGAACGAATGTTGTGGA 18935 Query 119302 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGT 119361 | || | |||||| || ||||| | ||||| || || ||| | | | | | | Sbjct 18934 TATGTAAACCAATCCCTCCTGCACTTTTTGAAATCAAAGCACACGATTTTAAAGTATCAT 18875 Query 119362 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCC 119421 | || || || || || ||| |||| | || | | |||||| |||||||| || | Sbjct 18874 ATATACCTTCAATAGAATCATCCTTCATAGCAAGCAAGAAGCATGAAGACATTTGCGGTC 18815 Query 119422 TGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCT 119481 | ||||||||||| ||||| | || | | ||| | || | | ||| |||||| Sbjct 18814 TTGGTGTACCAGCATTGAACAAGCAAGGAGAACCATGGGTAAAGAATCTTTGAGACATCA 18755 Query 119482 TGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 119541 || ||||| || | ||| || || || | ||||| ||||| | | ||| | || Sbjct 18754 AGTTATAGGTTTCAATGACTCTTGGTATATCATTACCGTGGATACCAACAGCGACTCTCA 18695 Query 119542 TAAACATGTATTGGGGTGTTTC 119563 | | || | ||||||| |||| Sbjct 18694 TGATCAAATGTTGGGGTCTTTC 18673 >seq30 Length=68702 Score = 114 bits (126), Expect = 2e-20 Identities = 353/540 (65%), Gaps = 12/540 (2%) Strand=Plus/Minus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 ||||||||||||||| | || || | || || ||||| |||| ||||| |||||||| Sbjct 2121 CCACATATCAAACTGTAATATCCCATTTGATGCCGGCGAGCCCTGGAATGTTTCATATGG 2062 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCT--CGCCTCGAGGGCTGCGTGATACATTGTTTCA 118460 |||||| | |||||||| | || ||||| || || || || || || |||||| Sbjct 2061 GCCCTCTTTCATTGCCAATTC--AACTGAGGCCTCAAGTGCAGCATGGTATATAGTTTCA 2004 Query 118461 AAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATA 118520 || || || ||| | || || ||| | |||||||| | | ||| | | | Sbjct 2003 AATATCTGAATATTTAATGTTTTAGCCATTGCAGAATCAAAAGGTAATCGAAGCTCAGCA 1944 Query 118521 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC 118580 || | ||| || | ||||| ||||| | ||||||| || |||||| |||| || | Sbjct 1943 AACAAATCTGCCAAGCCTTGTACACCCAAAGCAATTGGACGGTGTCTCTTATTTGAATAT 1884 Query 118581 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 118640 || || | || ||||| | ||| || || | || | ||| | || | Sbjct 1883 TCTGCCGTTTTAACAGGATATTTTGTTACATCAATCACTTTGTTCAAATTCCTTGTCAAG 1824 Query 118641 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA---ACTGCGAGTCTCT---TCATTG 118694 || || |||| || | ||||| ||||||| | || | |||| || Sbjct 1823 ACTTTGGTGACAGAGTGCAATTTTTCAAAATCAAATGCAATGGCATCCTCTGTGGTTTTC 1764 Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA-GT 118753 | ||| |||| | || | ||||| | ||| ||||||| || || | || | | | Sbjct 1763 AAATATGTAGGCAATGCAAGAGACGCTAAATTGCACACAGCAGTTTC-TTCTGGTGATGA 1705 Query 118754 GTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 118813 || || | |||||| ||||| |||||| ||| || || || | ||| ||||| || Sbjct 1704 ATATTCAACAATTTCGCAACACAAATTTGAAGACTTTATTGTCCCGATGTTTTTTTGGTT 1645 Query 118814 TGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 118873 ||| ||||||||||| || || ||||| ||||| || || || || || ||||| || Sbjct 1644 TGATTTTGTGTTACAGGCGTCTTTGTATAGCATATAAGGACCACCTGTTTCAGTTTGAGA 1585 >seq240 Length=19657 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/202 (69%), Gaps = 7/202 (3%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| |||||||| || ||| | |||||| | ||| ||| ||||||||||| ||| Sbjct 8572 TCAAACCCATCCATTTCTACCAACAATTGATTCAATGTTGTTTCACGTTCATCATTGGCA 8631 Query 14210 -----GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAA 14264 ||||| || | | | ||||| ||||| | || || |||||||| | || | Sbjct 8632 CCAGTGGCATTCCCCTTGGA--ACGTTGTTTACCAATAGCATCGATTTCATCAACAAACA 8689 Query 14265 CGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGA 14324 | || | || ||||||||| ||| | ||| | ||| || ||||| || || | Sbjct 8690 CAATCGAAGGGGCATTTTCACGTGCAGTCTTAAATAAATCACGAACTCTAGATGCTCCAA 8749 Query 14325 CACCCACAAACATCTCCACAAA 14346 |||| |||||||| || ||||| Sbjct 8750 CACCAACAAACATTTCTACAAA 8771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429185717680