Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23]
778 sequences; 14,044,856 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq241 331 8e-86
seq22 291 7e-74
>seq241
Length=19529
Score = 331 bits (366), Expect = 8e-86
Identities = 604/880 (69%), Gaps = 6/880 (1%)
Strand=Plus/Plus
Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306
||||||| ||||||||| || || |||| ||||| |||||||| || || || | ||
Sbjct 8909 AACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAA 8968
Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTT-TTCACACTTTA 4365
||||| |||||||| |||||||| |||||||| | ||||| ||| || || | |
Sbjct 8969 AGAAATGTTTTCCATGAAATCAAATGGATTAGTAACATTGTATACTTTCTTGTTACCTAA 9028
Query 4366 GAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAA 4425
| | |||| ||||| ||||| || ||||| || || || | ||| | | ||||| |
Sbjct 9029 GGCCAACAA-CAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCA 9087
Query 4426 TTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTT 4485
| || | || ||| || || || | || || |||||| || | | || ||||
Sbjct 9088 TACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTT 9147
Query 4486 CTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATA 4545
| || || || | || | | ||| ||||||| | ||| || | |||||||||
Sbjct 9148 CAGTAATAATTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAACAATA 9207
Query 4546 AACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTA 4605
|||| ||||| ||| || |||||||| ||||||| ||||| ||||| || || || |
Sbjct 9208 AACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCA 9267
Query 4606 ATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGA 4665
| || |||||||||||||||||||| | ||| || |||| |||||||| ||| |||||
Sbjct 9268 ACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAGA 9327
Query 4666 ATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTT 4725
| || ||||| || || ||||| || ||||||| || || || | | ||||
Sbjct 9328 AAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATCTT 9387
Query 4726 TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785
||||||||| | ||||||| |||||| || | || || ||||| || || || |
Sbjct 9388 GAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCAT 9447
Query 4786 TAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845
||||||| | | ||| || |||| || ||||| || |||| || ||
Sbjct 9448 TAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGTAGG 9507
Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905
|||| ||||| || ||||| || || || || ||||| || || | ||||| | |
Sbjct 9508 TTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGGGAA 9567
Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965
||||||||| | | || |||| | ||||||||| || ||||| ||| || |
Sbjct 9568 GTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAGCAG 9627
Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCC 5022
| ||||| ||||| || ||| | ||| || ||| | || | | || ||||
Sbjct 9628 CGAAAAATGCCAATACTCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTTATTCC 9687
Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082
||| |||||||||| | ||||| | |||||| | ||||| || || ||||| ||||
Sbjct 9688 AGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTTCAGCTT 9747
Query 5083 TTTTGTACATAGACCAAATATCAGGATA-CTGAATCGGAA 5121
| || || | |||||| ||| | || |||| | ||||
Sbjct 9748 TCTTATAAAAGTTCCAAATTTCATGGTATCTGATTGGGAA 9787
>seq22
Length=82586
Score = 291 bits (322), Expect = 7e-74
Identities = 596/880 (68%), Gaps = 17/880 (2%)
Strand=Plus/Minus
Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316
|||||||| || || |||| |||||| |||||||||||||| || | || || ||||||
Sbjct 9502 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAATGAGATATTT 9443
Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTT---AGAGCTACA 4373
|||||||||||||| |||||||| | ||||||| |||| | ||| | || ||
Sbjct 9442 TCCATAAAATCAAATGGATTAGTAACATTGTAATACTTTTTA---TTTCCAAAGGCCACT 9386
Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433
| ||||| ||||| |||||||| | |||||||| ||| | || || || ||||| | |
Sbjct 9385 AATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAAT 9326
Query 4434 AATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATT 4493
|| || || ||||| | | ||| | | || || ||||| || || || || ||
Sbjct 9325 AAAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATG 9266
Query 4494 ATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCA 4553
|| | | || | ||| ||| |||||||| ||| || || || ||||| |||
Sbjct 9265 ATTTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGGCA 9206
Query 4554 AAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613
|||| || | |||||||||| || ||||| ||| || ||||| || ||||| |||
Sbjct 9205 TAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTGGC 9146
Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCT 4673
|| || || || || || | ||| || || || ||||| || ||| || ||||| |||
Sbjct 9145 ATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAATATACCT 9086
Query 4674 TCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCAT 4733
|| ||||| |||||||| || |||| | || | | | ||||| ||||||
Sbjct 9085 TCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGAATCCAC 9026
Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA---AAT 4790
| | ||||| | ||||||| | | | | || || | | ||||| ||| ||
Sbjct 9025 CTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTAAACAAA 8966
Query 4791 AATTTACTTTTTTCAAATGGGT-CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849
|| | || ||| ||||| |||||| || || || |||| | ||| | ||
Sbjct 8965 AAGTCCGCTTCTTC---TGGGTCCTTGAA-GTATGTTTCGATTAACAACGAATAAGTCTC 8910
Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909
||||| || ||||| || |||||||| ||| | | ||| |||| || |||
Sbjct 8909 TGAATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCTCTGGTATTTG 8850
Query 4910 AACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA 4969
||||| ||| || |||| || ||||| || || || ||||| || ||| |||||
Sbjct 8849 TACTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGGCAGCAAA 8790
Query 4970 AAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTG 5026
|| ||||| || | || || || | ||| | || | | || |||||||
Sbjct 8789 GAATGCCAACACTCGGGAGATGAAAAATCTTTCATTTTCGTTCATTTTATTGTTCCAGTC 8730
Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086
|| |||||||||| |||| |||| |||||| | ||||||||||| || || |||||
Sbjct 8729 GGCCAAATCTTTACTTAAGTCAAGCTCTTCAGCTGTCCAAAACGAGGCCAACGACTTTTT 8670
Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGGAAGTATG 5126
||| | ||| | || ||||||| ||| ||| ||||
Sbjct 8669 GTAGAATTGCCATAACTCCGGATACTTAATAGGATATATG 8630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427045550769074
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |