Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647555.1_202014-04-23] 778 sequences; 14,044,856 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq241 331 8e-86 seq22 291 7e-74 >seq241 Length=19529 Score = 331 bits (366), Expect = 8e-86 Identities = 604/880 (69%), Gaps = 6/880 (1%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||||||| ||||||||| || || |||| ||||| |||||||| || || || | || Sbjct 8909 AACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAA 8968 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTT-TTCACACTTTA 4365 ||||| |||||||| |||||||| |||||||| | ||||| ||| || || | | Sbjct 8969 AGAAATGTTTTCCATGAAATCAAATGGATTAGTAACATTGTATACTTTCTTGTTACCTAA 9028 Query 4366 GAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAA 4425 | | |||| ||||| ||||| || ||||| || || || | ||| | | ||||| | Sbjct 9029 GGCCAACAA-CAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCA 9087 Query 4426 TTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTT 4485 | || | || ||| || || || | || || |||||| || | | || |||| Sbjct 9088 TACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTT 9147 Query 4486 CTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATA 4545 | || || || | || | | ||| ||||||| | ||| || | ||||||||| Sbjct 9148 CAGTAATAATTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAACAATA 9207 Query 4546 AACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTA 4605 |||| ||||| ||| || |||||||| ||||||| ||||| ||||| || || || | Sbjct 9208 AACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCA 9267 Query 4606 ATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGA 4665 | || |||||||||||||||||||| | ||| || |||| |||||||| ||| ||||| Sbjct 9268 ACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAGA 9327 Query 4666 ATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTT 4725 | || ||||| || || ||||| || ||||||| || || || | | |||| Sbjct 9328 AAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATCTT 9387 Query 4726 TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785 ||||||||| | ||||||| |||||| || | || || ||||| || || || | Sbjct 9388 GAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCAT 9447 Query 4786 TAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 ||||||| | | ||| || |||| || ||||| || |||| || || Sbjct 9448 TAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGTAGG 9507 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 |||| ||||| || ||||| || || || || ||||| || || | ||||| | | Sbjct 9508 TTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGGGAA 9567 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 ||||||||| | | || |||| | ||||||||| || ||||| ||| || | Sbjct 9568 GTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAGCAG 9627 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCC 5022 | ||||| ||||| || ||| | ||| || ||| | || | | || |||| Sbjct 9628 CGAAAAATGCCAATACTCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTTATTCC 9687 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 ||| |||||||||| | ||||| | |||||| | ||||| || || ||||| |||| Sbjct 9688 AGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTTCAGCTT 9747 Query 5083 TTTTGTACATAGACCAAATATCAGGATA-CTGAATCGGAA 5121 | || || | |||||| ||| | || |||| | |||| Sbjct 9748 TCTTATAAAAGTTCCAAATTTCATGGTATCTGATTGGGAA 9787 >seq22 Length=82586 Score = 291 bits (322), Expect = 7e-74 Identities = 596/880 (68%), Gaps = 17/880 (2%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 |||||||| || || |||| |||||| |||||||||||||| || | || || |||||| Sbjct 9502 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAATGAGATATTT 9443 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTT---AGAGCTACA 4373 |||||||||||||| |||||||| | ||||||| |||| | ||| | || || Sbjct 9442 TCCATAAAATCAAATGGATTAGTAACATTGTAATACTTTTTA---TTTCCAAAGGCCACT 9386 Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433 | ||||| ||||| |||||||| | |||||||| ||| | || || || ||||| | | Sbjct 9385 AATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAAT 9326 Query 4434 AATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATT 4493 || || || ||||| | | ||| | | || || ||||| || || || || || Sbjct 9325 AAAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATG 9266 Query 4494 ATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCA 4553 || | | || | ||| ||| |||||||| ||| || || || ||||| ||| Sbjct 9265 ATTTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGGCA 9206 Query 4554 AAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 |||| || | |||||||||| || ||||| ||| || ||||| || ||||| ||| Sbjct 9205 TAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTGGC 9146 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCT 4673 || || || || || || | ||| || || || ||||| || ||| || ||||| ||| Sbjct 9145 ATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAATATACCT 9086 Query 4674 TCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCAT 4733 || ||||| |||||||| || |||| | || | | | ||||| |||||| Sbjct 9085 TCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGAATCCAC 9026 Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA---AAT 4790 | | ||||| | ||||||| | | | | || || | | ||||| ||| || Sbjct 9025 CTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTAAACAAA 8966 Query 4791 AATTTACTTTTTTCAAATGGGT-CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 || | || ||| ||||| |||||| || || || |||| | ||| | || Sbjct 8965 AAGTCCGCTTCTTC---TGGGTCCTTGAA-GTATGTTTCGATTAACAACGAATAAGTCTC 8910 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909 ||||| || ||||| || |||||||| ||| | | ||| |||| || ||| Sbjct 8909 TGAATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCTCTGGTATTTG 8850 Query 4910 AACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA 4969 ||||| ||| || |||| || ||||| || || || ||||| || ||| ||||| Sbjct 8849 TACTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGGCAGCAAA 8790 Query 4970 AAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTG 5026 || ||||| || | || || || | ||| | || | | || ||||||| Sbjct 8789 GAATGCCAACACTCGGGAGATGAAAAATCTTTCATTTTCGTTCATTTTATTGTTCCAGTC 8730 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 || |||||||||| |||| |||| |||||| | ||||||||||| || || ||||| Sbjct 8729 GGCCAAATCTTTACTTAAGTCAAGCTCTTCAGCTGTCCAAAACGAGGCCAACGACTTTTT 8670 Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGGAAGTATG 5126 ||| | ||| | || ||||||| ||| ||| |||| Sbjct 8669 GTAGAATTGCCATAACTCCGGATACTTAATAGGATATATG 8630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427045550769074