Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq243 196 5e-45 seq2 188 7e-43 >seq243 Length=19219 Score = 196 bits (216), Expect = 5e-45 Identities = 585/889 (66%), Gaps = 24/889 (3%) Strand=Plus/Plus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 |||||| | ||||||| || ||| | |||||| ||||| || || || || | || Sbjct 8824 AACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAA 8883 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAGC--TGAAAA-TATCTTAGAGTACCC 16017 ||| || |||||||| |||||||| ||||||||| | || | | | |||| |||| Sbjct 8884 AGAAATGTTTTCCATGAAATCAAATGGATTAGTAACATTGTATACTTTCTTGT--TACCT 8941 Query 16018 CAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATT 16077 || | ||| |||||||| || || ||||| || ||||||||||| |||| || || Sbjct 8942 AAGGCCAACAAC-AATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTT 9000 Query 16078 AATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGC 16137 || || | | || |||||||| | || || | | || || | |||| || Sbjct 9001 CATACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGC 9060 Query 16138 TTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTG-TATGGTTT--AGGTGTTTAAA 16194 ||| |||| || | | | | || | | || | || ||| | || ||| Sbjct 9061 TTCAGTAATAATTT---TTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAA 9117 Query 16195 CATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAA 16254 || || ||| || ||||| |||| ||||| ||||||| || | ||||| || || Sbjct 9118 CAATAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAA 9177 Query 16255 AGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGA 16314 ||| |||||||||||| |||| || || |||||||| || | ||||||||| || Sbjct 9178 AGTCAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACT 9237 Query 16315 AAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTT 16374 |||||| ||||| ||||| | ||||| || | ||||| ||| | ||| || || | Sbjct 9238 AAAGAAAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATC 9297 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || |||||||||| |||| || ||||| | || ||||| || | | || Sbjct 9298 ATCTTGAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAAT 9357 Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 ||| ||||| || | || ||| ||| ||| |||| || || ||||| | |||| Sbjct 9358 GGCATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGA 9417 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 ||| ||||||| || ||||| || || || || || || ||||| || || || Sbjct 9418 GTAGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTC 9477 Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | | ||| ||||| | || ||| | ||| ||| || ||||| ||| Sbjct 9478 GGGAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGA 9537 Query 16615 TGCAGCAAAAAACGCCAATATGTGCT-TA---ATGAAATATTTTTC-GTCAGATGTAA-- 16667 ||||| ||||| ||||||| || || | |||||| |||| | || || Sbjct 9538 AGCAGCGAAAAATGCCAATA----CTCTAGAGACAAAATATCTTTCATTTTCATTCAATT 9593 Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAG 16727 ||| ||| || | |||||||| | ||| | |||||| | ||||| || || Sbjct 9594 TGTTATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAG 9653 Query 16728 CCACTGCCTTTTTATACATTTTCCAAATATCATTGTAT-TGTATGGGAA 16775 | | || || ||||| | |||||||| |||| |||| || |||||| Sbjct 9654 CTTCAGCTTTCTTATAAAAGTTCCAAATTTCATGGTATCTGATTGGGAA 9702 >seq2 Length=135431 Score = 188 bits (208), Expect = 7e-43 Identities = 490/734 (67%), Gaps = 26/734 (4%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||||||| ||| | ||||| ||||| |||||||| || | || || ||||||| Sbjct 59362 TTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATATTTT 59421 Query 15972 CCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCAGTTCCGTAACT 16030 |||| |||||||| ||||||||| | | |||| || | | || || | ||| | Sbjct 59422 CCATGAAATCAAATGGATTAGTAACATTGTAATACTTTTTATTTCCAAAGGCCACTAA-T 59480 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 |||| ||| || |||||||| | ||| || ||||| ||||| ||||| ||||| | | Sbjct 59481 AATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATAAA 59540 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 ||| ||||| || | | ||| ||| || || || || || || ||||||| Sbjct 59541 GATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGAT- 59599 Query 16151 TCGGTGGCTC-GTG-TTTC---AGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACG 16205 | ||| || |||| ||| ||| ||| |||| | || | | ||| | Sbjct 59600 ----TTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGG 59655 Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTG 16265 | | || || | |||||||||| || || | ||| || ||||| || || |||| Sbjct 59656 CATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTG 59715 Query 16266 GCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATAC 16325 |||| || | ||||||||||||||| || || ||||| || || || ||||||| Sbjct 59716 GCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAATATAC 59775 Query 16326 CCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCC 16385 | ||||| | ||||| || | |||| || || ||| |||||| | | |||||| Sbjct 59776 CTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGAATCC 59835 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAAC- 16444 | | |||| |||||||||| | | || | || |||| || || |||||| Sbjct 59836 ACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTAAACA 59895 Query 16445 --AATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTT 16502 || | | ||| || ||| || | | || || || || | || || | | Sbjct 59896 AAAAGTCCGCTTCTT-CTG--GGTCCTTGAAGTATGTTTCGATTAACAACGAATAAGTCT 59952 Query 16503 CTGAGTGTATGTTCTCTATGGCTATCTGAAA--TCCATAGAAGCATCGAGCCTCCGCTAT 16560 |||| || ||||| || || |||||||| | ||| || | ||||||| | ||| Sbjct 59953 CTGAATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAG--TTGAGCCTCTGGTAT 60010 Query 16561 TTGTACTTC--CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCA 16618 ||||||||| ||| ||| | |||| ||| ||||||||| || ||||| || ||| Sbjct 60011 TTGTACTTCAGCACAGAAATT--TTCCACCAAGTTCTCATTGACAATACCATCCGAGGCA 60068 Query 16619 GCAAAAAACGCCAA 16632 ||||| || ||||| Sbjct 60069 GCAAAGAATGCCAA 60082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511408697729440