Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23]
892 sequences; 13,998,205 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq243 196 5e-45
seq2 188 7e-43
>seq243
Length=19219
Score = 196 bits (216), Expect = 5e-45
Identities = 585/889 (66%), Gaps = 24/889 (3%)
Strand=Plus/Plus
Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960
|||||| | ||||||| || ||| | |||||| ||||| || || || || | ||
Sbjct 8824 AACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAA 8883
Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAGC--TGAAAA-TATCTTAGAGTACCC 16017
||| || |||||||| |||||||| ||||||||| | || | | | |||| ||||
Sbjct 8884 AGAAATGTTTTCCATGAAATCAAATGGATTAGTAACATTGTATACTTTCTTGT--TACCT 8941
Query 16018 CAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATT 16077
|| | ||| |||||||| || || ||||| || ||||||||||| |||| || ||
Sbjct 8942 AAGGCCAACAAC-AATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTT 9000
Query 16078 AATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGC 16137
|| || | | || |||||||| | || || | | || || | |||| ||
Sbjct 9001 CATACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGC 9060
Query 16138 TTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTG-TATGGTTT--AGGTGTTTAAA 16194
||| |||| || | | | | || | | || | || ||| | || |||
Sbjct 9061 TTCAGTAATAATTT---TTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAA 9117
Query 16195 CATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAA 16254
|| || ||| || ||||| |||| ||||| ||||||| || | ||||| || ||
Sbjct 9118 CAATAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAA 9177
Query 16255 AGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGA 16314
||| |||||||||||| |||| || || |||||||| || | ||||||||| ||
Sbjct 9178 AGTCAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACT 9237
Query 16315 AAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTT 16374
|||||| ||||| ||||| | ||||| || | ||||| ||| | ||| || || |
Sbjct 9238 AAAGAAAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATC 9297
Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434
|| |||||||||| |||| || ||||| | || ||||| || | | ||
Sbjct 9298 ATCTTGAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAAT 9357
Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494
||| ||||| || | || ||| ||| ||| |||| || || ||||| | ||||
Sbjct 9358 GGCATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGA 9417
Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554
||| ||||||| || ||||| || || || || || || ||||| || || ||
Sbjct 9418 GTAGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTC 9477
Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614
| | ||| ||||| | || ||| | ||| ||| || ||||| |||
Sbjct 9478 GGGAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGA 9537
Query 16615 TGCAGCAAAAAACGCCAATATGTGCT-TA---ATGAAATATTTTTC-GTCAGATGTAA-- 16667
||||| ||||| ||||||| || || | |||||| |||| | || ||
Sbjct 9538 AGCAGCGAAAAATGCCAATA----CTCTAGAGACAAAATATCTTTCATTTTCATTCAATT 9593
Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAG 16727
||| ||| || | |||||||| | ||| | |||||| | ||||| || ||
Sbjct 9594 TGTTATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAG 9653
Query 16728 CCACTGCCTTTTTATACATTTTCCAAATATCATTGTAT-TGTATGGGAA 16775
| | || || ||||| | |||||||| |||| |||| || ||||||
Sbjct 9654 CTTCAGCTTTCTTATAAAAGTTCCAAATTTCATGGTATCTGATTGGGAA 9702
>seq2
Length=135431
Score = 188 bits (208), Expect = 7e-43
Identities = 490/734 (67%), Gaps = 26/734 (4%)
Strand=Plus/Plus
Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971
||||||||||| ||| | ||||| ||||| |||||||| || | || || |||||||
Sbjct 59362 TTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATATTTT 59421
Query 15972 CCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCAGTTCCGTAACT 16030
|||| |||||||| ||||||||| | | |||| || | | || || | ||| |
Sbjct 59422 CCATGAAATCAAATGGATTAGTAACATTGTAATACTTTTTATTTCCAAAGGCCACTAA-T 59480
Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090
|||| ||| || |||||||| | ||| || ||||| ||||| ||||| ||||| | |
Sbjct 59481 AATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATAAA 59540
Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150
||| ||||| || | | ||| ||| || || || || || || |||||||
Sbjct 59541 GATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGAT- 59599
Query 16151 TCGGTGGCTC-GTG-TTTC---AGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACG 16205
| ||| || |||| ||| ||| ||| |||| | || | | ||| |
Sbjct 59600 ----TTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGG 59655
Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTG 16265
| | || || | |||||||||| || || | ||| || ||||| || || ||||
Sbjct 59656 CATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTG 59715
Query 16266 GCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATAC 16325
|||| || | ||||||||||||||| || || ||||| || || || |||||||
Sbjct 59716 GCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAATATAC 59775
Query 16326 CCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCC 16385
| ||||| | ||||| || | |||| || || ||| |||||| | | ||||||
Sbjct 59776 CTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGAATCC 59835
Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAAC- 16444
| | |||| |||||||||| | | || | || |||| || || ||||||
Sbjct 59836 ACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTAAACA 59895
Query 16445 --AATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTT 16502
|| | | ||| || ||| || | | || || || || | || || | |
Sbjct 59896 AAAAGTCCGCTTCTT-CTG--GGTCCTTGAAGTATGTTTCGATTAACAACGAATAAGTCT 59952
Query 16503 CTGAGTGTATGTTCTCTATGGCTATCTGAAA--TCCATAGAAGCATCGAGCCTCCGCTAT 16560
|||| || ||||| || || |||||||| | ||| || | ||||||| | |||
Sbjct 59953 CTGAATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAG--TTGAGCCTCTGGTAT 60010
Query 16561 TTGTACTTC--CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCA 16618
||||||||| ||| ||| | |||| ||| ||||||||| || ||||| || |||
Sbjct 60011 TTGTACTTCAGCACAGAAATT--TTCCACCAAGTTCTCATTGACAATACCATCCGAGGCA 60068
Query 16619 GCAAAAAACGCCAA 16632
||||| || |||||
Sbjct 60069 GCAAAGAATGCCAA 60082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511408697729440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |