Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq57 174 2e-38 seq65 152 8e-32 >seq57 Length=48952 Score = 174 bits (192), Expect = 2e-38 Identities = 446/686 (65%), Gaps = 50/686 (7%) Strand=Plus/Plus Query 205330 AATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTA 205389 ||||| |||||| | ||||| | | ||| ||||||| ||||| ||| ||||||| Sbjct 16935 AATTTAGGAAATTGTTTTGGAATTCTTTCAAATTGTTCCTTTAAGGCATCTATATGATCC 16994 Query 205390 ACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAA 205449 | ||| | |||||||| ||| | | ||||||| ||||| | | || | | Sbjct 16995 AAATAAACATGTGCATCACCTAAAGTATGAATGAATTCGCCACAGTCCATATCCACCACA 17054 Query 205450 TGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCC 205509 ||||||||||| | ||| || || || |||| |||||||||||||||||| ||| Sbjct 17055 TGTGCAATCATCTTAGTTAACAACGCGTAGGATGCAATATTAAATGGTACACCTAACCCC 17114 Query 205510 ATATCAGCTGATCTTTGATACATTTGACATG---------------------TAAGATAT 205548 |||||| ||||||||||||| | ||| | || | | Sbjct 17115 ATATCACAAGATCTTTGATACAATAAACAAGATAATTTTGGTTTGGCGGTTTTAGCTTGT 17174 Query 205549 TT---ATTATT-----------------------AATT-ACATGAAATTGTACAAAACA- 205580 || |||||| | || |||| |||||| |||||| | Sbjct 17175 TTGGGATTATTTGAGTCTGGTTGAGATGTAGGGAAGTTCACATAAAATTG-ACAAAATAC 17233 Query 205581 ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTAT 205640 |||||| || |||| |||| || ||| |||| |||||||| || | | || || Sbjct 17234 ATGACATGGAGGTAATGCCATTTTAGCAAAATCTGGTGGATTCCAAGCAGACATGATAAT 17293 Query 205641 ATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCC 205700 ||||| | ||| || |||| | ||| || |||| || | ||| ||||||||||| Sbjct 17294 TCTTCTATCATAAGGATTTGTTTTCAATTTTTTAATAACATCTTGTAACTGATCAAATCC 17353 Query 205701 TTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAA 205760 ||| |||||| | ||| ||| |||||| ||||||||||| | |||||| || Sbjct 17354 TTGGCCACTATAATCAGAATCACAATCTTTATATTCTGCACCAAAATGTCTCCATTGGAA 17413 Query 205761 ACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatata 205820 |||||||||||| || ||||| ||||| | || | | || || ||| | || | | Sbjct 17414 ACCATAAACTGGTCCCAAATCCCCTTCACGACGATGAGTCAATCCTAATTTGTCTAAAAA 17473 Query 205821 ttttaatgatccattttcatcccaaatatggattcctttattttttaGAATATTTGTATT 205880 | |||||||| | ||||| || | | ||| || | ||| || || | || Sbjct 17474 CTCACGAGATCCATTGCCTTCCCAGATTTTCACTCCCTTTTCGCTTAATATTTTAGCATC 17533 Query 205881 AGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTT 205940 ||| || |||| | ||||||||||||||| | || ||| ||| | |||| | ||| Sbjct 17534 AGTAGACCCAGCAACAAACCATAATAATTCATGAATAATCCCTTTTGAAAAAACCTTTTT 17593 Query 205941 TGTTGTAAATAATGGAAATGAATCAT 205966 || || ||||| ||||| | ||||| Sbjct 17594 AGTGGTTAATAAAGGAAAGGTATCAT 17619 >seq65 Length=44577 Score = 152 bits (168), Expect = 8e-32 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| || | ||||| |||| || ||||| || ||| |||| ||||| | Sbjct 11574 ACGATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACCATTACTTTAGAAGTTGAATCT 11515 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| || ||| ||| | || ||||||||||| ||||||||||| ||||| || Sbjct 11514 TCTGACACTATTGACAATGTCAAGTCCAAAATTCAAGACAAAGAAGGTATTCCACCAGAC 11455 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | |||||||| || |||||||| || || || |||| ||| || || Sbjct 11454 CAACAAAGATTAATTTTTGCTGGTAAACAATTGGAAGACGGTAGAACTTTATCTGACTAC 11395 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || || ||||| ||||| |||||||| ||||| || | ||| |||||||| ||| || Sbjct 11394 AACATCCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTAAGAGGTGGTGGTAAGAA 11336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755447576665600