Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23]
892 sequences; 13,998,205 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq243 320 2e-82
seq2 205 9e-48
>seq243
Length=19219
Score = 320 bits (354), Expect = 2e-82
Identities = 608/886 (69%), Gaps = 17/886 (2%)
Strand=Plus/Plus
Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002
|||||| || || |||||| |||||||||||||| || || || | || ||||| ||
Sbjct 8833 TTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAAGAAATGTT 8892
Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCGCATCCCAATTCCAA 16059
|||||| |||||||| ||||| | |||| | |||| || | | || || ||||
Sbjct 8893 TTCCATGAAATCAAATGGATTAGT--AACATT-GTATACTTTCTTGTTACCTAAGGCCAA 8949
Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119
||| |||||||| || || ||||| || || || ||| || | ||||||||| || |
Sbjct 8950 CAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCATACCCAA 9009
Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179
|| || || | || || || || | | ||| || | || ||| |||||| | ||
Sbjct 9010 CAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTTCAGTAAT 9069
Query 16180 TATATCTCTTACTACACTATTTAACGGAGG---GTTTAATAAGTGTTTAAACATTATACA 16236
|| | || | ||| | | | | || |||| || || ||||| || |||
Sbjct 9070 AATTT---TTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAACAATAAACA 9126
Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296
|||||| ||| || || ||||| || || | || ||||||||||| || || | ||
Sbjct 9127 AGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCC 9186
Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356
|||||||| |||| ||||| | ||| || |||| |||||||||||| |||||| ||
Sbjct 9187 TGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAGAAAAT 9246
Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416
|||||||||||| ||||| ||||| |||| ||||| ||| | | | || ||
Sbjct 9247 ACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATCTTGAAT 9306
Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476
|||||| ||||||| | ||||| | || || ||| || || | || ||||||||
Sbjct 9307 CCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCATTAAA 9366
Query 16477 TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536
||| |||| ||||| |||| || ||||| || |||| |||| || ||||
Sbjct 9367 TAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGTAGGTTTC 9426
Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596
||||||||| || ||||| || || ||||| || || || | ||||||| | |||
Sbjct 9427 TGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGGGAAGTTG 9486
Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656
||||||| | || |||| ||||||||| ||| || ||||| ||| || ||
Sbjct 9487 AACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAGCAGCGAA 9546
Query 16657 AAACGCAAGTATGTGTTTA-ATAAAAtttttttCGTTATC--TGAAAGTTTTA-ACCAGT 16712
||| || | || | | | | ||||| | |||| || || | || | ||| |||||
Sbjct 9547 AAATGCCAATA-CTCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTTATTCCAGT 9605
Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772
|| |||||||| ||||||| ||||| | ||||| |||||||| |||| || |
Sbjct 9606 CATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTTCAGCTTTCT 9665
Query 16773 TATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATA 16818
|||| | ||||| || || | ||| || || |||| |||||
Sbjct 9666 TATAAAAGTTCCAAATTTCATGGTATCTGATTGGGAACATCACATA 9711
>seq2
Length=135431
Score = 205 bits (226), Expect = 9e-48
Identities = 568/862 (66%), Gaps = 33/862 (4%)
Strand=Plus/Plus
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
||||| || ||| ||||||||||||||||||||| ||||| || | || || ||||||
Sbjct 59361 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATATTT 59420
Query 16004 TCCATAAAATCAAAAGGATTTTTTGAAC-----AATAGTATTTATCGCATCCCAATTCCA 16058
||||| |||||||| ||||| | ||| |||| | ||||| ||| || |||
Sbjct 59421 TCCATGAAATCAAATGGATTAGT--AACATTGTAATACTTTTTAT---TTCCAAAGGCCA 59475
Query 16059 ACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTA 16118
||||||| ||| || |||||||| | |||||| ||| || ||||| |||||||| |
Sbjct 59476 CTAATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCA 59535
Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178
||| || || | || || | ||| | ||||| || ||| | || || || | |
Sbjct 59536 ATAAAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAA 59595
Query 16179 TTATATCTCTTACTACACTATTTAACG-GAGGGTTTA----ATAAGTGTTTAAACATTAT 16233
| || || || | |||| | || |||||| ||| | || | |
Sbjct 59596 TGAT-----TTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAA 59650
Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293
||| ||| |||| || | |||||||| | | || || || || |||||||| |
Sbjct 59651 ACAGGCATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAA 59710
Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353
|||||||| | || | ||| || | ||| || || || ||||| |||||| || ||
Sbjct 59711 TCCTGGCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAA 59770
Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413
|||||||||||| || ||||| |||||||||| |||| | ||| || | ||
Sbjct 59771 TATACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTG 59830
Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473
||||| | | ||||||| ||||||| | | | | || || || || |||||
Sbjct 59831 AATCCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATT 59890
Query 16474 AAATAAATAAtttttttCTT-TGCTATCTAAAATATAAGTATCTATTAGTAAACTATACA 16532
||| ||| | | ||||| || || || || || || |||| || |||
Sbjct 59891 AAACAAAAAGTCCGCTTCTTCTGGGTCCTTGAA-GTATGTTTCGATTAACAACGAATAAG 59949
Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592
| |||||||| || || ||||| |||||||| || | | ||| || | ||
Sbjct 59950 TCTCTGAATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCTCTGGTA 60009
Query 16593 TTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652
|||||||||||| | || |||| | ||||| || || || || ||||| || |
Sbjct 60010 TTTGTACTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGGCAG 60069
Query 16653 CAAAAAACGCAAGTA----TGTGTTTAATAAAAttt--ttttCGTT-ATCTGAAAGTTTT 16705
|||| || || | | | | | || || ||| |||||||| || | | |||
Sbjct 60070 CAAAGAATGCCAACACTCGGGAGATGAAAAATCTTTCATTTTCGTTCATTTTATTGTT-- 60127
Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765
|||||| | |||||||| ||| || | |||||| | |||||||| || || |
Sbjct 60128 --CCAGTCGGCCAAATCTTTACTTAAGTCAAGCTCTTCAGCTGTCCAAAACGAGGCCAAC 60185
Query 16766 GCCTTTTTATACATTTTCCATA 16787
| |||||| || | || |||||
Sbjct 60186 GACTTTTTGTAGAATTGCCATA 60207
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462506842991200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |