Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq243 320 2e-82 seq2 205 9e-48 >seq243 Length=19219 Score = 320 bits (354), Expect = 2e-82 Identities = 608/886 (69%), Gaps = 17/886 (2%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||| || || |||||| |||||||||||||| || || || | || ||||| || Sbjct 8833 TTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAAGAAATGTT 8892 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCGCATCCCAATTCCAA 16059 |||||| |||||||| ||||| | |||| | |||| || | | || || |||| Sbjct 8893 TTCCATGAAATCAAATGGATTAGT--AACATT-GTATACTTTCTTGTTACCTAAGGCCAA 8949 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 ||| |||||||| || || ||||| || || || ||| || | ||||||||| || | Sbjct 8950 CAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCATACCCAA 9009 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 || || || | || || || || | | ||| || | || ||| |||||| | || Sbjct 9010 CAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTTCAGTAAT 9069 Query 16180 TATATCTCTTACTACACTATTTAACGGAGG---GTTTAATAAGTGTTTAAACATTATACA 16236 || | || | ||| | | | | || |||| || || ||||| || ||| Sbjct 9070 AATTT---TTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAACAATAAACA 9126 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 |||||| ||| || || ||||| || || | || ||||||||||| || || | || Sbjct 9127 AGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCC 9186 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 |||||||| |||| ||||| | ||| || |||| |||||||||||| |||||| || Sbjct 9187 TGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAGAAAAT 9246 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416 |||||||||||| ||||| ||||| |||| ||||| ||| | | | || || Sbjct 9247 ACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATCTTGAAT 9306 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 |||||| ||||||| | ||||| | || || ||| || || | || |||||||| Sbjct 9307 CCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCATTAAA 9366 Query 16477 TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536 ||| |||| ||||| |||| || ||||| || |||| |||| || |||| Sbjct 9367 TAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGTAGGTTTC 9426 Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596 ||||||||| || ||||| || || ||||| || || || | ||||||| | ||| Sbjct 9427 TGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGGGAAGTTG 9486 Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 ||||||| | || |||| ||||||||| ||| || ||||| ||| || || Sbjct 9487 AACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAGCAGCGAA 9546 Query 16657 AAACGCAAGTATGTGTTTA-ATAAAAtttttttCGTTATC--TGAAAGTTTTA-ACCAGT 16712 ||| || | || | | | | ||||| | |||| || || | || | ||| ||||| Sbjct 9547 AAATGCCAATA-CTCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTTATTCCAGT 9605 Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 || |||||||| ||||||| ||||| | ||||| |||||||| |||| || | Sbjct 9606 CATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTTCAGCTTTCT 9665 Query 16773 TATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATA 16818 |||| | ||||| || || | ||| || || |||| ||||| Sbjct 9666 TATAAAAGTTCCAAATTTCATGGTATCTGATTGGGAACATCACATA 9711 >seq2 Length=135431 Score = 205 bits (226), Expect = 9e-48 Identities = 568/862 (66%), Gaps = 33/862 (4%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| || ||| ||||||||||||||||||||| ||||| || | || || |||||| Sbjct 59361 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATATTT 59420 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAAC-----AATAGTATTTATCGCATCCCAATTCCA 16058 ||||| |||||||| ||||| | ||| |||| | ||||| ||| || ||| Sbjct 59421 TCCATGAAATCAAATGGATTAGT--AACATTGTAATACTTTTTAT---TTCCAAAGGCCA 59475 Query 16059 ACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTA 16118 ||||||| ||| || |||||||| | |||||| ||| || ||||| |||||||| | Sbjct 59476 CTAATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCA 59535 Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 ||| || || | || || | ||| | ||||| || ||| | || || || | | Sbjct 59536 ATAAAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAA 59595 Query 16179 TTATATCTCTTACTACACTATTTAACG-GAGGGTTTA----ATAAGTGTTTAAACATTAT 16233 | || || || | |||| | || |||||| ||| | || | | Sbjct 59596 TGAT-----TTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAA 59650 Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| ||| |||| || | |||||||| | | || || || || |||||||| | Sbjct 59651 ACAGGCATAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAA 59710 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 |||||||| | || | ||| || | ||| || || || ||||| |||||| || || Sbjct 59711 TCCTGGCATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAA 59770 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 |||||||||||| || ||||| |||||||||| |||| | ||| || | || Sbjct 59771 TATACCTTCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTG 59830 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 ||||| | | ||||||| ||||||| | | | | || || || || ||||| Sbjct 59831 AATCCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATT 59890 Query 16474 AAATAAATAAtttttttCTT-TGCTATCTAAAATATAAGTATCTATTAGTAAACTATACA 16532 ||| ||| | | ||||| || || || || || || |||| || ||| Sbjct 59891 AAACAAAAAGTCCGCTTCTTCTGGGTCCTTGAA-GTATGTTTCGATTAACAACGAATAAG 59949 Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592 | |||||||| || || ||||| |||||||| || | | ||| || | || Sbjct 59950 TCTCTGAATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCTCTGGTA 60009 Query 16593 TTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 |||||||||||| | || |||| | ||||| || || || || ||||| || | Sbjct 60010 TTTGTACTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGGCAG 60069 Query 16653 CAAAAAACGCAAGTA----TGTGTTTAATAAAAttt--ttttCGTT-ATCTGAAAGTTTT 16705 |||| || || | | | | | || || ||| |||||||| || | | ||| Sbjct 60070 CAAAGAATGCCAACACTCGGGAGATGAAAAATCTTTCATTTTCGTTCATTTTATTGTT-- 60127 Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765 |||||| | |||||||| ||| || | |||||| | |||||||| || || | Sbjct 60128 --CCAGTCGGCCAAATCTTTACTTAAGTCAAGCTCTTCAGCTGTCCAAAACGAGGCCAAC 60185 Query 16766 GCCTTTTTATACATTTTCCATA 16787 | |||||| || | || ||||| Sbjct 60186 GACTTTTTGTAGAATTGCCATA 60207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462506842991200