Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq243 277 2e-69 seq2 275 6e-69 >seq243 Length=19219 Score = 277 bits (306), Expect = 2e-69 Identities = 575/850 (68%), Gaps = 7/850 (1%) Strand=Plus/Plus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 ||||| || |||||| || || |||||||||||||||||| || || ||||| || Sbjct 8822 ATAACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCC 8881 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACC 14019 | || || |||||||| |||||||||||||| || |||| | ||||| | ||| Sbjct 8882 AAAGAAATGTTTTCCATGAAATCAAATGGATTAGTA-ACATTGTATACTTTCTTGTTACC 8940 Query 14020 TAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATT 14079 || | || | |||||||| || | ||| ||||| |||||| |||| || | ||| || Sbjct 8941 TAAGGCCAACAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTT 9000 Query 14080 CATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC 14139 |||||| | | || |||| || ||| || | ||||| || | | ||||| Sbjct 9001 CATACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGC 9060 Query 14140 CTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 14199 || | ||||| | || ||| || ||| || | || | ||| ||| | Sbjct 9061 TTCAGTAATAATTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAACAA 9120 Query 14200 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 |||||| ||||| ||| || | || |||||||| | ||| | |||||||| || || Sbjct 9121 TAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGT 9180 Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319 || |||||||| || |||| ||||| ||||| || || | ||| ||||| || ||| Sbjct 9181 CAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAA 9240 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT- 14378 ||| || || |||||||||||||| || | ||||| ||| ||| || | |||| | | Sbjct 9241 GAAAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATC 9300 Query 14379 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14438 | || |||||||| ||||||| |||| ||| |||| |||| | || | |||| | Sbjct 9301 TTGA-ATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGG 9359 Query 14439 CATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498 |||||||||| | || |||| || | | ||||| || ||||| | ||| | Sbjct 9360 CATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGT 9419 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 | |||| || || ||||||||||| || || ||||| || || || | ||||| | Sbjct 9420 AGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGG 9479 Query 14559 ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618 ||| || || | | || |||| || |||||| ||| ||||||||| || Sbjct 9480 GAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAG 9539 Query 14619 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTA---TTGCTCTTCATTGCTGAGTTTTT 14675 | || ||||||||||||| | | ||| || || | |||||| || | Sbjct 9540 CAGCGAAAAATGCCAATACTCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTTAT 9599 Query 14676 TCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAG 14735 |||| || | ||||| ||| | ||| | ||| || | ||||| ||| ||| ||| Sbjct 9600 TCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTTCAG 9659 Query 14736 CTTTTTTATA 14745 |||| ||||| Sbjct 9660 CTTTCTTATA 9669 >seq2 Length=135431 Score = 275 bits (304), Expect = 6e-69 Identities = 502/727 (69%), Gaps = 10/727 (1%) Strand=Plus/Plus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 ||||| || ||| |||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 59361 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATATTT 59420 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATA--AACACTTTATCACAACCTAGTTCTAATA 14030 ||||| |||||||||||||| || |||| || ||||| | | || | | | || Sbjct 59421 TCCATGAAATCAAATGGATTAGTA-ACATTGTAATACTTTTT-ATTTCCAAAGGCCACTA 59478 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 ||||| ||| |||| || |||| ||| || |||| || ||||||||||| || | || Sbjct 59479 ATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATA 59538 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 ||| |||| || | | ||| ||| ||| || |||| |||||||||| | || | Sbjct 59539 AAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGA 59598 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 14210 | || ||| ||||| |||||| || |||| || || | ||||| ||| Sbjct 59599 TTTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGGCAT 59658 Query 14211 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 14270 |||| |||| || || |||| | ||| | ||| || |||||||| |||||||||| Sbjct 59659 AATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTGGCA 59718 Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 14330 |||| || | ||| |||||||| || ||||| || || || || || ||||| || | Sbjct 59719 TCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAATATACCTT 59778 Query 14331 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCAT 14389 |||| ||||||||||| | |||| || || || | || | | || | || ||||| Sbjct 59779 CAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGA-ATCCAC 59837 Query 14390 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449 | | ||||| || | ||||| | | || || || |||||||||||||||| ||| Sbjct 59838 CTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTAAACAAA 59897 Query 14450 TGTTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14507 || ||||| | || |||||| |||||| || || | || ||| | || | Sbjct 59898 AAGTCCGCTTCTTCTGGGTCCTTGAA--GTATGTTTCGATTAACAACGAATAAGTCTCTG 59955 Query 14508 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14567 | || ||||||||||| |||||||| || | | ||| |||| ||||| Sbjct 59956 AATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCTCTGGTATTTGTA 60015 Query 14568 CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14627 | || | | || |||| |||| || ||||| || |||||||| || ||||| | Sbjct 60016 CTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGGCAGCAAAGA 60075 Query 14628 ATGCCAA 14634 ||||||| Sbjct 60076 ATGCCAA 60082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482340221846560