Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23]
892 sequences; 13,998,205 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq243 125 6e-24
seq65 96.9 3e-15
>seq243
Length=19219
Score = 125 bits (138), Expect = 6e-24
Identities = 497/773 (64%), Gaps = 13/773 (2%)
Strand=Plus/Minus
Query 57534 CGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCA 57593
||| | | ||| ||||| || || ||| | || ||||||||| | || || || ||
Sbjct 9717 CGTCGTTATGTGATGTTCCCAATCAGATACCATGAAATTTGGAACTTTTATAAGAAAGCT 9658
Query 57594 GAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT 57653
||||| || || ||||||| ||||||| | || || ||| ||| || || ||| ||
Sbjct 9657 GAAGCTTCTTTCTGGACCGCCGAAGAAATCGATTTGAGTAAAGATTTGGATGACTGGAAT 9598
Query 57654 TCCC---TCAAAGAATCTGAGAGAAATTTTAT-TAAACACGTGTTGGCGTTTTTCGCCGC 57709
| | || ||| ||| ||| ||||| | | | | || ||||| |||||||| ||
Sbjct 9597 AACAAATTGAATGAAAATGAAAGATATTTTGTCTCTAGA-GTATTGGCATTTTTCGCTGC 9539
Query 57710 ATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGAC 57769
|| |||||||||||| || || || | |||| || || ||||| ||| | |
Sbjct 9538 TTCTGATGGTATTGTTGGTGAAAACTTAATTGAAAACTTCTCGACTGAAGTTCAACTTCC 9479
Query 57770 GGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTA 57829
|| || | || || ||||| || ||| | || |||||| | |||||||||| ||
Sbjct 9478 CGAAGCCAAATCATTCTACGGTTTCCAAATCATGATGGAAAACATTCATTCAGAAACCTA 9419
Query 57830 TTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA-ACGTAGAC-TGTTCAAC 57887
|| || | || || || ||| | || | | | | |||| || || | || ||
Sbjct 9418 CTCTTTATTAATTGAAACTTACATAAA--AGATCCTCAAGAAGCCGATTACTTATTTAAT 9361
Query 57888 GCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA 57947
|| || | | || || || ||||| || || ||| | ||||||||||| ||
Sbjct 9360 GCCATTGCCAATATTCCATGTATTCAAAAGAAAGCTGACTGGGCTATCAAATGGATTCAA 9301
Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007
| ||| || | || || || | || || || || || |||||||| |||
Sbjct 9300 GATGATGAAGCCTTGTATGGTGAAAGATTAGTTGCCTTTGCTGCAGTTGAAGGTATTTTC 9241
Query 58008 TTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTG 58067
||| || ||||| | || || ||| |||| || | || | ||||| || ||
Sbjct 9240 TTTAGTGGTTCATTTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTAATGCCAGGGTTG 9181
Query 58068 ACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127
|| || ||||||||||| | | || || ||| | || ||||| ||||| || ||
Sbjct 9180 ACTTTCTCAAACGAGTTGATTTGCAGAGATGAAGGTTTACACACTGACTTTGCTTGTTTA 9121
Query 58128 ATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTG--GACATTATCACCG 58185
||| |||| | || | ||| | | || | | ||| | ||||| || |
Sbjct 9120 TTGTTTGCTCATTTGCAAAACAGACCATCTCCAGA--GATTGTTGAAAAAATTATTACTG 9063
Query 58186 AGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTA 58245
| || || | | || || |||| | ||||| || || || ||| || || | ||||
Sbjct 9062 AAGCTGTTGATGTTGAGAAAGAGTACTTTACCGATGCTCTTCCAGTGTCCTTGTTGGGTA 9003
Query 58246 TGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298
||||| | | ||||||| | |||||||| || || || || ||| | |||
Sbjct 9002 TGAACTGTAACTTGATGTGTCAATACATTGAATTCGTCGCTGATAGATTGTTG 8950
>seq65
Length=44577
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| | || || ||||| || || | || |||||| | ||
Sbjct 11571 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACCATTACTTTAGAAGTTGAATCTTCT 11512
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | || | ||||| | ||| ||||| ||||| | || || |||||
Sbjct 11511 GACACTATTGACAATGTCAAGTCCAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAA 11452
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| | |||| || ||||| ||||| ||||||||| || ||| | || || |||
Sbjct 11451 CAAAGATTAATTTTTGCTGGTAAACAATTGGAAGACGGTAGAACTTTATCTGACTACAAC 11392
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| ||||| ||||| ||| | || |||| | ||| | || || |||
Sbjct 11391 ATCCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTAAGAGGTGGT 11344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445761429704640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |