Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq243 125 6e-24 seq65 96.9 3e-15 >seq243 Length=19219 Score = 125 bits (138), Expect = 6e-24 Identities = 497/773 (64%), Gaps = 13/773 (2%) Strand=Plus/Minus Query 57534 CGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCA 57593 ||| | | ||| ||||| || || ||| | || ||||||||| | || || || || Sbjct 9717 CGTCGTTATGTGATGTTCCCAATCAGATACCATGAAATTTGGAACTTTTATAAGAAAGCT 9658 Query 57594 GAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT 57653 ||||| || || ||||||| ||||||| | || || ||| ||| || || ||| || Sbjct 9657 GAAGCTTCTTTCTGGACCGCCGAAGAAATCGATTTGAGTAAAGATTTGGATGACTGGAAT 9598 Query 57654 TCCC---TCAAAGAATCTGAGAGAAATTTTAT-TAAACACGTGTTGGCGTTTTTCGCCGC 57709 | | || ||| ||| ||| ||||| | | | | || ||||| |||||||| || Sbjct 9597 AACAAATTGAATGAAAATGAAAGATATTTTGTCTCTAGA-GTATTGGCATTTTTCGCTGC 9539 Query 57710 ATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGAC 57769 || |||||||||||| || || || | |||| || || ||||| ||| | | Sbjct 9538 TTCTGATGGTATTGTTGGTGAAAACTTAATTGAAAACTTCTCGACTGAAGTTCAACTTCC 9479 Query 57770 GGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTA 57829 || || | || || ||||| || ||| | || |||||| | |||||||||| || Sbjct 9478 CGAAGCCAAATCATTCTACGGTTTCCAAATCATGATGGAAAACATTCATTCAGAAACCTA 9419 Query 57830 TTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA-ACGTAGAC-TGTTCAAC 57887 || || | || || || ||| | || | | | | |||| || || | || || Sbjct 9418 CTCTTTATTAATTGAAACTTACATAAA--AGATCCTCAAGAAGCCGATTACTTATTTAAT 9361 Query 57888 GCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA 57947 || || | | || || || ||||| || || ||| | ||||||||||| || Sbjct 9360 GCCATTGCCAATATTCCATGTATTCAAAAGAAAGCTGACTGGGCTATCAAATGGATTCAA 9301 Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007 | ||| || | || || || | || || || || || |||||||| ||| Sbjct 9300 GATGATGAAGCCTTGTATGGTGAAAGATTAGTTGCCTTTGCTGCAGTTGAAGGTATTTTC 9241 Query 58008 TTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTG 58067 ||| || ||||| | || || ||| |||| || | || | ||||| || || Sbjct 9240 TTTAGTGGTTCATTTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTAATGCCAGGGTTG 9181 Query 58068 ACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127 || || ||||||||||| | | || || ||| | || ||||| ||||| || || Sbjct 9180 ACTTTCTCAAACGAGTTGATTTGCAGAGATGAAGGTTTACACACTGACTTTGCTTGTTTA 9121 Query 58128 ATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTG--GACATTATCACCG 58185 ||| |||| | || | ||| | | || | | ||| | ||||| || | Sbjct 9120 TTGTTTGCTCATTTGCAAAACAGACCATCTCCAGA--GATTGTTGAAAAAATTATTACTG 9063 Query 58186 AGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTA 58245 | || || | | || || |||| | ||||| || || || ||| || || | |||| Sbjct 9062 AAGCTGTTGATGTTGAGAAAGAGTACTTTACCGATGCTCTTCCAGTGTCCTTGTTGGGTA 9003 Query 58246 TGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298 ||||| | | ||||||| | |||||||| || || || || ||| | ||| Sbjct 9002 TGAACTGTAACTTGATGTGTCAATACATTGAATTCGTCGCTGATAGATTGTTG 8950 >seq65 Length=44577 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| | || || ||||| || || | || |||||| | || Sbjct 11571 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACCATTACTTTAGAAGTTGAATCTTCT 11512 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | ||| ||||| ||||| | || || ||||| Sbjct 11511 GACACTATTGACAATGTCAAGTCCAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAA 11452 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | |||| || ||||| ||||| ||||||||| || ||| | || || ||| Sbjct 11451 CAAAGATTAATTTTTGCTGGTAAACAATTGGAAGACGGTAGAACTTTATCTGACTACAAC 11392 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||| ||||| ||| | || |||| | ||| | || || ||| Sbjct 11391 ATCCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTAAGAGGTGGT 11344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761429704640