Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq243 149 1e-30 seq2 131 3e-25 seq57 98.7 2e-15 >seq243 Length=19219 Score = 149 bits (164), Expect = 1e-30 Identities = 302/443 (68%), Gaps = 13/443 (3%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||||||||||||||| || |||||||||||| |||| || || || |||||| Sbjct 9270 GTTGCCTTTGCTGCAGTTGAAGGTATTTTCTTTAGTGGTTCATTTGCTTCTATCTTCTGG 9211 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || || ||| | |||| || | || | ||| || ||||| |||| || || Sbjct 9210 TTGAAAAAGAGAGGTTTAATGCCAGGGTTGACTTTCTCAAACGAGTTGATTTGCAGAGAT 9151 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 |||||| | || |||||||| || | |||| | ||| | | ||| Sbjct 9150 GAAGGTTTACACACTGACTTTGCTTGTTTATTGTTTGCTCA---TTTGCAAAACAGACCA 9094 Query 102098 TCAAGAGAAAGGATTCTTG---AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 || ||| |||| ||| ||||| | |||||||| || |||| |||| | Sbjct 9093 TCTCCAGA---GATTGTTGAAAAAATTATTACTGAAGCTGTTGATGTTGAGAAAGAGTAC 9037 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 | || | | | || || || || |||| |||||||| || |||||| | || ||| Sbjct 9036 TTTACCGATGCTCTTCCAGTGTCCTTGTTGGGTATGAACTGTAACTTGATGTGTCAATAC 8977 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAATG 102272 |||||||| || || |||| | | ||| | | | || || || |||| | || |||| Sbjct 8976 ATTGAATTCGTCGCTGATAGATTGTTGTTGGCCTTAGGTAACAAG-AAAGTA-TACAATG 8919 Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332 |||| || || || |||||||| || ||||| | | ||||||||| || |||| Sbjct 8918 TTACTAATCCATTTGATTTCATGGAAAACATTTCTTTGGCTGGTAAGACCAATTTCTTTG 8859 Query 102333 AAAAGAGAGTCGCCGAGTATCAA 102355 |||| ||||| | || || ||| Sbjct 8858 AAAAAAGAGTTTCAGACTACCAA 8836 >seq2 Length=135431 Score = 131 bits (144), Expect = 3e-25 Identities = 292/438 (67%), Gaps = 3/438 (1%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| |||||||| |||||||| || || || |||||| | || ||| | ||||||||| Sbjct 59797 GTTGCGTTTGCTGCCGTTGAAGGTATATTTTTCAGTGGTTCGTTTGCAGCAATTTTCTGG 59738 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| ||||| | |||| || | || | || ||||| || |||| | ||| Sbjct 59737 TTAAAGAAAAGGGGGTTGATGCCAGGATTGACATTTTCGAATGAATTGATTTGCCGAGAC 59678 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 ||||| |||| || | ||| || || | || | ||| ||| || Sbjct 59677 GAAGGGATTCACACGGATTATGCCTGTTTGTTATTCTCGTA---TTTAAAGAATAAACCT 59621 Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157 || ||||| ||| |||| | || || || || ||||| || ||| | || Sbjct 59620 TCTCCAGAAATCATTGAGAAAATCATTACCGAGGCTGTGACTATTGAGAAAAAATATTTC 59561 Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217 | | | | || || || ||| |||||||||| || | |||||| ||||||| || Sbjct 59560 AGCGATGCGCTTCCAGTATCTTTATTGGGAATGAATTGTGACTTGATGTGCCAGTATGTT 59501 Query 102218 GAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACC 102277 |||||||| || ||| | |||| || | | ||| ||||| | || |||||||| Sbjct 59500 GAATTTGTTGCTGATCGATTATTAGTGGCCTTTGGAAATAAAAAGTATTACAATGTTACT 59441 Query 102278 AACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAG 102337 || || || |||||||| ||||| ||| | | ||| || || || ||||||||| Sbjct 59440 AATCCATTTGATTTCATGGAAAATATCTCCTTGGCTGGTAAAACTAATTTCTTTGAAAAG 59381 Query 102338 AGAGTCGCCGAGTATCAA 102355 ||||| | || || ||| Sbjct 59380 AGAGTTTCTGATTACCAA 59363 >seq57 Length=48952 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 || || ||||||||||| || || || ||||||||| | ||||||||||| |||||| | Sbjct 17440 GAAGGGGATTTGGGACCAGTTTATGGTTTCCAATGGAGACATTTTGGTGCAGAATATAAA 17381 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTA--AAGA 35510 ||| ||| ||||||| ||| | || ||||||| || ||| || || || | Sbjct 17380 GATTGTGATTCTGATTATAGTGGCCAAGGATTTGATCAGTT--ACAAGATGTTATTAAAA 17323 Query 35511 CCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATC 35570 ||| | |||||| |||||||||| || || ||| | || |||||||| ||| Sbjct 17322 AATTGAAAACAAATCCTTATGATAGAAGAATTATCATGTCTGCTTGGAATCCACCAGATT 17263 Query 35571 TTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTG 35620 || ||||| | |||||||| || | | ||||||||||||| Sbjct 17262 TTGCTAAAATGGCATTACCTCCATGTCATGTATTTTGTCAATTTTATGTG 17213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989572690291860