Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23]
892 sequences; 13,998,205 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq243 149 1e-30
seq2 131 3e-25
seq57 98.7 2e-15
>seq243
Length=19219
Score = 149 bits (164), Expect = 1e-30
Identities = 302/443 (68%), Gaps = 13/443 (3%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
||||||||||||||||||||||| || |||||||||||| |||| || || || ||||||
Sbjct 9270 GTTGCCTTTGCTGCAGTTGAAGGTATTTTCTTTAGTGGTTCATTTGCTTCTATCTTCTGG 9211
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
| || || || ||| | |||| || | || | ||| || ||||| |||| || ||
Sbjct 9210 TTGAAAAAGAGAGGTTTAATGCCAGGGTTGACTTTCTCAAACGAGTTGATTTGCAGAGAT 9151
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097
|||||| | || |||||||| || | |||| | ||| | | |||
Sbjct 9150 GAAGGTTTACACACTGACTTTGCTTGTTTATTGTTTGCTCA---TTTGCAAAACAGACCA 9094
Query 102098 TCAAGAGAAAGGATTCTTG---AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154
|| ||| |||| ||| ||||| | |||||||| || |||| |||| |
Sbjct 9093 TCTCCAGA---GATTGTTGAAAAAATTATTACTGAAGCTGTTGATGTTGAGAAAGAGTAC 9037
Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214
| || | | | || || || || |||| |||||||| || |||||| | || |||
Sbjct 9036 TTTACCGATGCTCTTCCAGTGTCCTTGTTGGGTATGAACTGTAACTTGATGTGTCAATAC 8977
Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAATG 102272
|||||||| || || |||| | | ||| | | | || || || |||| | || ||||
Sbjct 8976 ATTGAATTCGTCGCTGATAGATTGTTGTTGGCCTTAGGTAACAAG-AAAGTA-TACAATG 8919
Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332
|||| || || || |||||||| || ||||| | | ||||||||| || ||||
Sbjct 8918 TTACTAATCCATTTGATTTCATGGAAAACATTTCTTTGGCTGGTAAGACCAATTTCTTTG 8859
Query 102333 AAAAGAGAGTCGCCGAGTATCAA 102355
|||| ||||| | || || |||
Sbjct 8858 AAAAAAGAGTTTCAGACTACCAA 8836
>seq2
Length=135431
Score = 131 bits (144), Expect = 3e-25
Identities = 292/438 (67%), Gaps = 3/438 (1%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
||||| |||||||| |||||||| || || || |||||| | || ||| | |||||||||
Sbjct 59797 GTTGCGTTTGCTGCCGTTGAAGGTATATTTTTCAGTGGTTCGTTTGCAGCAATTTTCTGG 59738
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
| ||||| ||||| | |||| || | || | || ||||| || |||| | |||
Sbjct 59737 TTAAAGAAAAGGGGGTTGATGCCAGGATTGACATTTTCGAATGAATTGATTTGCCGAGAC 59678
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097
||||| |||| || | ||| || || | || | ||| ||| ||
Sbjct 59677 GAAGGGATTCACACGGATTATGCCTGTTTGTTATTCTCGTA---TTTAAAGAATAAACCT 59621
Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157
|| ||||| ||| |||| | || || || || ||||| || ||| | ||
Sbjct 59620 TCTCCAGAAATCATTGAGAAAATCATTACCGAGGCTGTGACTATTGAGAAAAAATATTTC 59561
Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217
| | | | || || || ||| |||||||||| || | |||||| ||||||| ||
Sbjct 59560 AGCGATGCGCTTCCAGTATCTTTATTGGGAATGAATTGTGACTTGATGTGCCAGTATGTT 59501
Query 102218 GAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACC 102277
|||||||| || ||| | |||| || | | ||| ||||| | || ||||||||
Sbjct 59500 GAATTTGTTGCTGATCGATTATTAGTGGCCTTTGGAAATAAAAAGTATTACAATGTTACT 59441
Query 102278 AACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAG 102337
|| || || |||||||| ||||| ||| | | ||| || || || |||||||||
Sbjct 59440 AATCCATTTGATTTCATGGAAAATATCTCCTTGGCTGGTAAAACTAATTTCTTTGAAAAG 59381
Query 102338 AGAGTCGCCGAGTATCAA 102355
||||| | || || |||
Sbjct 59380 AGAGTTTCTGATTACCAA 59363
>seq57
Length=48952
Score = 98.7 bits (108), Expect = 2e-15
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452
|| || ||||||||||| || || || ||||||||| | ||||||||||| |||||| |
Sbjct 17440 GAAGGGGATTTGGGACCAGTTTATGGTTTCCAATGGAGACATTTTGGTGCAGAATATAAA 17381
Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTA--AAGA 35510
||| ||| ||||||| ||| | || ||||||| || ||| || || || |
Sbjct 17380 GATTGTGATTCTGATTATAGTGGCCAAGGATTTGATCAGTT--ACAAGATGTTATTAAAA 17323
Query 35511 CCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATC 35570
||| | |||||| |||||||||| || || ||| | || |||||||| |||
Sbjct 17322 AATTGAAAACAAATCCTTATGATAGAAGAATTATCATGTCTGCTTGGAATCCACCAGATT 17263
Query 35571 TTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTG 35620
|| ||||| | |||||||| || | | |||||||||||||
Sbjct 17262 TTGCTAAAATGGCATTACCTCCATGTCATGTATTTTGTCAATTTTATGTG 17213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989572690291860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |