Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq243 298 5e-76 seq2 279 5e-70 >seq243 Length=19219 Score = 298 bits (330), Expect = 5e-76 Identities = 512/738 (69%), Gaps = 4/738 (1%) Strand=Plus/Plus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 ||||| || |||||| || || |||||||||||||||||| || || ||||| || Sbjct 8822 ATAACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCC 8881 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACC 13687 | || || |||||||| |||||||||||||| | | |||| | ||||| | ||| Sbjct 8882 AAAGAAATGTTTTCCATGAAATCAAATGGATT-AGTAACATTGTATACTTTCTTGTTACC 8940 Query 13688 TAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATT 13747 || | || | ||||||||||| | || ||||| |||||| |||| || | ||| || Sbjct 8941 TAAGGCCAACAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTT 9000 Query 13748 CATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC 13807 |||||| | | || |||| || ||| || | ||||| || | | ||||| Sbjct 9001 CATACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGC 9060 Query 13808 CTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13867 || | ||||| || || |||||| ||| || | || | ||| ||| | Sbjct 9061 TTCAGTAATAATTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAACAA 9120 Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 |||||| ||||| ||| || | || |||||||| | ||| | |||||||| || || Sbjct 9121 TAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGT 9180 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 || |||||||| || |||| ||||| ||||| || || | ||||||||| || ||| Sbjct 9181 CAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAA 9240 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT- 14046 ||| || || |||||||||||||| || | ||||| ||| ||| || | |||| | | Sbjct 9241 GAAAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATC 9300 Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 | || |||||||| ||||||| |||| ||| |||| |||| | || | |||| | Sbjct 9301 TTGA-ATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGG 9359 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 |||||||||| || || |||| || | | ||||| || ||||| | ||| | Sbjct 9360 CATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGT 9419 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 | |||| || || ||||||||||| || || ||||| || || || | ||||| | Sbjct 9420 AGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGG 9479 Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 ||| ||||| | | || |||| || |||||| ||| ||||||||| || Sbjct 9480 GAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAG 9539 Query 14287 CTGCAAAAAATGCCAATA 14304 | || ||||||||||||| Sbjct 9540 CAGCGAAAAATGCCAATA 9557 >seq2 Length=135431 Score = 279 bits (308), Expect = 5e-70 Identities = 503/727 (69%), Gaps = 10/727 (1%) Strand=Plus/Plus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||| || ||| |||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 59361 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATATTT 59420 Query 13641 TCCATAAAATCAAATGGATTTATTGACATA--AACACTTTATCACAACCTAGTTCTAATA 13698 ||||| |||||||||||||| | | |||| || ||||| | | || | | | || Sbjct 59421 TCCATGAAATCAAATGGATT-AGTAACATTGTAATACTTTTT-ATTTCCAAAGGCCACTA 59478 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||||| |||||||| ||| |||| ||| || |||| || ||||||||||| || | || Sbjct 59479 ATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATA 59538 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||| |||| || | | ||| ||| ||| || |||| ||||||||| | || | Sbjct 59539 AAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGA 59598 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13878 | | ||| || || |||||| || |||| || || | ||||| ||| Sbjct 59599 TTTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGGCAT 59658 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 |||| |||| || || |||| | ||| | ||| || |||||||| |||||||||| Sbjct 59659 AATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTGGCA 59718 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 |||| || | ||| |||||||| || ||||| ||||| || || || ||||| || | Sbjct 59719 TCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAATATACCTT 59778 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCAT 14057 |||| ||||||||||| | |||| || || || | || | | || | || ||||| Sbjct 59779 CAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGA-ATCCAC 59837 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 | | ||||| || | ||||| | | || || || |||||||||||||||| ||| Sbjct 59838 CTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTAAACAAA 59897 Query 14118 TATTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 | || ||||| | || |||||| |||||| || || | || ||| | || | Sbjct 59898 AAGTCCGCTTCTTCTGGGTCCTTGAA--GTATGTTTCGATTAACAACGAATAAGTCTCTG 59955 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 | || ||||||||||| |||||||| || | | ||| || | ||||| Sbjct 59956 AATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCTCTGGTATTTGTA 60015 Query 14236 CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14295 |||| | | || |||| |||| || ||||| || |||||||| || ||||| | Sbjct 60016 CTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGGCAGCAAAGA 60075 Query 14296 ATGCCAA 14302 ||||||| Sbjct 60076 ATGCCAA 60082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479722651032800