Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq243 269 3e-67 seq2 266 3e-66 >seq243 Length=19219 Score = 269 bits (298), Expect = 3e-67 Identities = 576/853 (68%), Gaps = 13/853 (2%) Strand=Plus/Plus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 ||||| || |||||| || || ||||||||||||||| || || || ||||| || Sbjct 8822 ATAACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCC 8881 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACC 13475 | || || |||||||| ||||| |||||||| || |||| | ||||| | ||| Sbjct 8882 AAAGAAATGTTTTCCATGAAATCAAATGGATTAGTA-ACATTGTATACTTTCTTGTTACC 8940 Query 13476 TAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATT 13535 || | || || ||||||||||| | || ||||| |||||| |||| || | ||| || Sbjct 8941 TAAGGCCAACAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTT 9000 Query 13536 CATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGC 13595 |||||| | | || |||| || || || | ||||| || | | ||||| Sbjct 9001 CATACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGC 9060 Query 13596 CTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13655 || | ||||| | | || ||| || ||| || | || | ||| ||| | Sbjct 9061 TTCAGTAATAATTTTTTCAACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAACAA 9120 Query 13656 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13715 |||||| ||||| ||| || | || |||||||| | ||| | |||||||| || || Sbjct 9121 TAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGT 9180 Query 13716 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 13775 || |||||||| || |||| ||||| ||||| || || | ||| ||||| || ||| Sbjct 9181 CAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAA 9240 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT- 13834 ||| || || |||||||||||||| || | || || ||| ||| || | |||| | | Sbjct 9241 GAAAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTTCATCATC 9300 Query 13835 TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 |||| |||||||| ||||||| |||| ||| |||| |||| | || | | || | Sbjct 9301 TTGA-ATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGG 9359 Query 13895 CATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 |||| ||||| | || |||| || | | ||||| || ||||| | ||| | Sbjct 9360 CATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGT 9419 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 | |||| || || |||||||| || || || ||||| || || || | ||||| | Sbjct 9420 AGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGG 9479 Query 14015 ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 ||| || || | | || |||| ||||||||| ||||||||||||| || Sbjct 9480 GAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAG 9539 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTA---TTGCTCTTCATT---GTTGAGTT 14128 | || ||||||||||||| | | ||| || || | |||||| ||| | Sbjct 9540 CAGCGAAAAATGCCAATACTCTAGAGACAAAATATCTTTCATTTTCATTCAATTTG---T 9596 Query 14129 TTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14188 | ||||| || | ||||| ||| | ||| | ||| || | ||||| ||| ||| Sbjct 9597 TATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTT 9656 Query 14189 CAGCTTTTTTATA 14201 ||||||| ||||| Sbjct 9657 CAGCTTTCTTATA 9669 >seq2 Length=135431 Score = 266 bits (294), Expect = 3e-66 Identities = 500/727 (69%), Gaps = 10/727 (1%) Strand=Plus/Plus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||| || ||| |||||| |||||||| || ||||||||||| ||| || |||||| Sbjct 59361 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATATTT 59420 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATA--AACACTTTATCACAACCTAGTTCTAATA 13486 ||||| ||||| |||||||| || |||| || ||||| | | || | | | || Sbjct 59421 TCCATGAAATCAAATGGATTAGTA-ACATTGTAATACTTTTT-ATTTCCAAAGGCCACTA 59478 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 |||||| |||||||| ||| |||| ||| || |||| || ||||||||||| || | || Sbjct 59479 ATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATA 59538 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 ||| |||| || | ||| ||| ||| || |||| |||||||||| | || | Sbjct 59539 AAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGA 59598 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13666 | ||| ||| || || |||||| || |||| || || | ||||| ||| Sbjct 59599 TTTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGGCAT 59658 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 |||| |||| || || |||| | ||| | ||| || |||||||| |||||||||| Sbjct 59659 AATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTGGCA 59718 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 |||| || | ||| |||||||| || ||||| || || || || || ||||| || | Sbjct 59719 TCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAATATACCTT 59778 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT-TTGATATCCAT 13845 |||| ||||||||||| | | || || || || | || | | || |||| ||||| Sbjct 59779 CAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCATCCTCGTCTTGA-ATCCAC 59837 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 | | ||||| || | ||||| | | || || || |||| || ||||| || ||| Sbjct 59838 CTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTAAACAAA 59897 Query 13906 TGTTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 13963 || ||||| | || |||||| |||||| || || | || ||| | || | Sbjct 59898 AAGTCCGCTTCTTCTGGGTCCTTGAA--GTATGTTTCGATTAACAACGAATAAGTCTCTG 59955 Query 13964 AGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14023 | || |||||||| || |||||||| || | | ||| |||| ||||| Sbjct 59956 AATGGATGTTTTCCATCATGATCTGAAACTTGTATACCAGTTGAGCCTCTGGTATTTGTA 60015 Query 14024 CCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAA 14083 | || | | || |||| ||||||| ||||| ||||||||||| || ||||| | Sbjct 60016 CTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGGCAGCAAAGA 60075 Query 14084 ATGCCAA 14090 ||||||| Sbjct 60076 ATGCCAA 60082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478583463734880