Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq243 259 4e-64 seq2 183 3e-41 >seq243 Length=19219 Score = 259 bits (286), Expect = 4e-64 Identities = 574/848 (68%), Gaps = 25/848 (3%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||| || || ||||||||||||||| || || || || || | || ||||| || Sbjct 8833 TTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAAGAAATGTT 8892 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT---TTTTTACACCCTAATTCTAG 12975 |||||| ||||| || ||||| | |||| | |||| || || ||||| | | Sbjct 8893 TTCCATGAAATCAAATGGATTAGT--AACATT-GTATACTTTCTTGTTACCTAAGGCCAA 8949 Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTAT 13035 |||||||| ||||| || || || ||||| || ||| || | ||||||||| || | Sbjct 8950 CAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGTTCATACCCAA 9009 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 || || || | ||| || || || | | ||| || | |||||| ||||| ||| Sbjct 9010 CAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAGCTTCAGTAAT 9069 Query 13096 TATGTCTCTTATTACGTTCTCTA---ATGGAGGATTTGATAGATGCTTAAACATCATACA 13152 || | | | | || ||||| |||| ||| | ||| ||||| | ||| Sbjct 9070 AATTTTT-TCA--ACAATCTCTGGAGATGGTCTGTTTTGCAAATGAGCAAACAATAAACA 9126 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212 ||||| ||| ||| || ||||||||||| | || | ||||||||| || || | || Sbjct 9127 AGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTGAGAAAGTCAACCC 9186 Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272 ||||| | |||| ||||| | ||| || |||| |||||| ||||| ||| || || Sbjct 9187 TGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTAAAGAAAAT 9246 Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTC-TCTA 13331 ||||||||||| ||||| || | || |||||||||||| | || | || | | Sbjct 9247 ACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATAC-AAGGCTTCATCATCTTGAA 9305 Query 13332 TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAA 13391 |||| || | ||||||| ||||| | || || || ||||| | || || |||| Sbjct 9306 TCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGGCAATGGCATTAA 9365 Query 13392 ATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTT 13451 |||| |||| ||| | | ||| || ||||| || || ||||| || ||| Sbjct 9366 ATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATAAAGAGTAGGTTT 9425 Query 13452 CTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCT 13511 |||||||||| ||||||||| ||||||||||| || || || | || || | | | Sbjct 9426 CTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGGCTTCGGGAAGTT 9485 Query 13512 GAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaa 13571 ||||||| | | || |||| ||||||||| ||| || || ||| |||||| | Sbjct 9486 GAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCATCAGAAGCAGCGA 9545 Query 13572 aaaaaGCAAGTATGTGCT-TA---ATAAAttttttttCGTTTTCTGACAACT--TTA-AC 13624 |||| || | || || || | ||| | | |||| ||||| ||| | ||| | Sbjct 9546 AAAATGCCAATA----CTCTAGAGACAAAATATCTTTCATTTTCATTCAATTTGTTATTC 9601 Query 13625 CAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCC 13684 || || |||||||| ||||| | || || ||||||| |||||||| |||| Sbjct 9602 CAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAGCTTCAGCT 9661 Query 13685 TTCTTATA 13692 |||||||| Sbjct 9662 TTCTTATA 9669 >seq2 Length=135431 Score = 183 bits (202), Expect = 3e-41 Identities = 485/729 (67%), Gaps = 20/729 (3%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || || |||||| |||||||| || || ||||| || | || || |||||| Sbjct 59361 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATATTT 59420 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACA--ATAGTATTTTTTACACCCTAATTCTAGTA 12977 ||||| ||||| || ||||| | |||| || || |||||| || || | | || Sbjct 59421 TCCATGAAATCAAATGGATTAGT--AACATTGTAATACTTTTTATTTCCAAAGGCCACTA 59478 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 | |||| ||||||||||| || | ||||| ||| || ||||| |||||||| | || Sbjct 59479 ATAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATA 59538 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 | ||| || | || || | ||| | ||||| || ||| || || ||| ||| | Sbjct 59539 AAGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGA 59598 Query 13098 TGTCTCTTATTACGTTCTCTA-ATGGAGGATTTGATAGATGCTTAAACATCATACATGCA 13156 | | ||| | | |||| | | || ||| || || | || | || ||| ||| Sbjct 59599 T-TTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGGCA 59657 Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216 |||| ||| | ||||| |||| | || | || || |||||||| | || ||| Sbjct 59658 TAATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTGGC 59717 Query 13217 ATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCT 13276 || | ||| | ||| || | ||| || || || ||||||||||| |||||||| ||| Sbjct 59718 ATCAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAAAATATACCT 59777 Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTC-TCT---AT 13332 ||||| || |||||||| | ||| || ||| ||||| | | | ||| ||| || Sbjct 59778 TCAACGGCAGCAAACGCAACCAATCTCTCAGCATACAAAGCA----TCCTCGTCTTGAAT 59833 Query 13333 CCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392 |||| | ||||||| | ||||||| | | | | | |||||||| || || ||||| Sbjct 59834 CCACCTGATGGCCCAATCGGCTTTTTCTCTGATGAATGGGATATTTTCAATAGCATTAAA 59893 Query 13393 TAAATAAtttttttCCTTACTGTC--TAAAATATAAGTATCTATCAATAAGCTATACATT 13450 ||| | | ||| | ||| | || ||| || || || || || ||| | Sbjct 59894 CAAAAAGTCCGCTTCTTCTGGGTCCTTGAAGTAT--GTTTCGATTAACAACGAATAAGTC 59951 Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA-TCTAGCCTCTGATAC 13509 |||||||| || ||||||||| || | ||||| | | || | |||||||| || Sbjct 59952 TCTGAATGGATGTTTTCCATCATGATCT-GAAACTTGTATACCAGTTGAGCCTCTGGTAT 60010 Query 13510 CTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGC 13569 || ||||| | | || |||| | ||||| || || || || || || ||||| Sbjct 60011 TTGTACTTCAGCACAGAAATTTTCCACCAAGTTCTCATTGACAATACCATCCGAGGCAGC 60070 Query 13570 aaaaaaaGC 13578 ||| || || Sbjct 60071 AAAGAATGC 60079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430977714682584