Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23]
892 sequences; 13,998,205 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq243 268 2e-66
seq65 149 1e-30
seq2 105 2e-17
>seq243
Length=19219
Score = 268 bits (296), Expect = 2e-66
Identities = 551/807 (68%), Gaps = 17/807 (2%)
Strand=Plus/Minus
Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819
|||||||| ||||| | |||||| | ||| || | | || || || ||||| ||
Sbjct 9654 GCTTCTTTCTGGACCGCCGAAGAAATCGATTTGAGTAAAGATTTGGATGACTGGAATAAC 9595
Query 268820 ---TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTG-CGTTTTTTGCAGTTAG 268875
|| || | | |||||| ||| | ||| | | | ||| | ||||| || | |
Sbjct 9594 AAATTGAATGAAAATGAAAGATATTTTGTCTCT-AGAGTATTGGCATTTTTCGCTGCTTC 9536
Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935
||||||||| ||| ||||| || | || || |||| || || || |||| ||
Sbjct 9535 TGATGGTATTGTTGGTGAAAACTTAATTGAAAACTTCTCGACTGAAGTTCAACTTCCCGA 9476
Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995
||||| || || ||||| ||||| || || ||||| ||||||||||| | |||
Sbjct 9475 AGCCAAATCATTCTACGGTTTCCAAATCATGATGGAAAACATTCATTCAGAAACCTACTC 9416
Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAG-ACT-ATTTTCTTCT 269053
| ||||||| || ||||| ||| | ||| | | | ||| | ||| |||| | |
Sbjct 9415 TTTATTAATTGAAACTTACATAAAAGAT--CCTCAAGAAGCCGATTACTTATTTAATGCC 9358
Query 269054 ATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT 269113
|| | ||| ||| | ||| ||| |||| |||||| | |||||||| | |||
Sbjct 9357 ATTGCCAATATTCCATGTATTCAAAAGAAAGCTGACTGGGCTATCAAATGGATTCAAGAT 9298
Query 269114 AGCGC-GCCTT--ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170
| ||||| | || ||||| |||||||| ||||| || || |||||||| ||||||
Sbjct 9297 GATGAAGCCTTGTATGGTGAAAGATTAGTTGCCTTTGCTGCAGTTGAAGGTATTTTCTTT 9238
Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230
|| || ||||| ||||||| |||||||| || ||||| | |||||||| || |||
Sbjct 9237 AGTGGTTCATTTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTAATGCCAGGGTTGACT 9178
Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290
||||| ||||| ||||| |||| || |||||||||||| ||||| |||||||||||
Sbjct 9177 TTCTCAAACGAGTTGATTTGCAGAGATGAAGGTTTACACACTGACTTTGCTTGTTTATTG 9118
Query 269291 TTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCA 269350
||| || ||| | | ||| ||| |||| ||| | || | ||||||| | |
Sbjct 9117 TTTGCTCATT---TGCAAAACAGACCATCTCCAGAGATTGTTGAAAAAATTATTACTGAA 9061
Query 269351 GCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTT-ATCGGTAT 269409
|||||| ||| || | ||| | | || || ||||| || | | ||| | |||||
Sbjct 9060 GCTGTTGATGTTGAGAAAGAGTACTTTACCGATGCTCT-TCCAGTGTCCTTGTTGGGTAT 9002
Query 269410 GAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTT 269469
||| | || | |||| |||| ||| | ||||| ||||||||||| || || | ||
Sbjct 9001 GAACTGTAACTTGATGTGTCAATACATTGAATTCGTCGCTGATAGATTGTTGTTGGCCTT 8942
Query 269470 AGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATT 269529
||| | ||| ||| || ||| ||||| ||| ||| ||||| || || || ||
Sbjct 8941 AGGTAACAAGAAAGTATACAATGTTACTAATCCATTTGATTTCATGGAAAACATTTCTTT 8882
Query 269530 AGAAGGTAAGGCTAATTTCTTCGAGAA 269556
| |||||| | |||||||| || ||
Sbjct 8881 GGCTGGTAAGACCAATTTCTTTGAAAA 8855
>seq65
Length=44577
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||||| || | || | || || |||||||| || || || || |||||||||
Sbjct 11345 CCACCTCTTAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 11404
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| ||||||||||||||| | |||||| ||||||||||||| || ||||| || || ||
Sbjct 11405 AAAGTTCTACCGTCTTCCAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 11464
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| |||||||| || ||||| || | || ||||| || | || || || ||| ||
Sbjct 11465 ATACCTTCTTTGTCTTGAATTTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 11524
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| ||||| || |||||||| | || || || || || |||||
Sbjct 11525 TCTAAAGTAATGGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 11571
>seq2
Length=135431
Score = 105 bits (116), Expect = 2e-17
Identities = 307/467 (66%), Gaps = 13/467 (3%)
Strand=Plus/Minus
Query 269129 GAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCT 269188
|| || || ||||| ||||| || || ||||||||||| || || || ||||| ||
Sbjct 59806 GAGAGATTGGTTGCGTTTGCTGCCGTTGAAGGTATATTTTTCAGTGGTTCGTTTGCAGCA 59747
Query 269189 ATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATA 269248
|| || ||||| |||||||| || | ||||||||||| || || || || ||||||||
Sbjct 59746 ATTTTCTGGTTAAAGAAAAGGGGGTTGATGCCAGGATTGACATTTTCGAATGAATTGATT 59687
Query 269249 AGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCA 269308
|| | |||||||| | ||| || | || ||||| ||||| || ||| |
Sbjct 59686 TGCCGAGACGAAGGGATTCACACGGATTATGCCTGTTTGTTATT--CT-CGTATTTAAAG 59630
Query 269309 CACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACA 269368
| |||||||||| ||| | | | |||| || ||||| || | || | |
Sbjct 59629 AATAAACCTTCTCCAGAAATCATTGAGAAAATCATTACCGAGGCTGTGACTATTGAGAAA 59570
Query 269369 GAATTTCTAACGGAAGCTCTATC--TATCGATCTTATCGGTATGAATAGCAAATCGATGA 269426
||| | | | || || || | |||| | | | || |||||| | | | ||||
Sbjct 59569 AAATATTTCAGCGATGCGCTTCCAGTATC--TTTATTGGGAATGAATTGTGACTTGATGT 59512
Query 269427 TAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAAT 269486
| ||| || | || || ||||| |||| | ||| | || || | |||||| |
Sbjct 59511 GCCAGTATGTTGAATTTGTTGCTGATCGATTATTAGTGGCCTTTGG---AAATAAAAAGT 59455
Query 269487 AT---AACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTA 269543
|| || ||| ||||| ||| ||| ||||| ||||| || || | ||||| |||
Sbjct 59454 ATTACAATGTTACTAATCCATTTGATTTCATGGAAAATATCTCCTTGGCTGGTAAAACTA 59395
Query 269544 ATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATG 269590
||||||| || ||| | || | | || || || |||||||||
Sbjct 59394 ATTTCTTTGAAAAGAGAGTTTCTGATTACCAAAAGGCCGGTGTAATG 59348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151385240955536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |