Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq243 268 2e-66 seq65 149 1e-30 seq2 105 2e-17 >seq243 Length=19219 Score = 268 bits (296), Expect = 2e-66 Identities = 551/807 (68%), Gaps = 17/807 (2%) Strand=Plus/Minus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 |||||||| ||||| | |||||| | ||| || | | || || || ||||| || Sbjct 9654 GCTTCTTTCTGGACCGCCGAAGAAATCGATTTGAGTAAAGATTTGGATGACTGGAATAAC 9595 Query 268820 ---TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTG-CGTTTTTTGCAGTTAG 268875 || || | | |||||| ||| | ||| | | | ||| | ||||| || | | Sbjct 9594 AAATTGAATGAAAATGAAAGATATTTTGTCTCT-AGAGTATTGGCATTTTTCGCTGCTTC 9536 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 ||||||||| ||| ||||| || | || || |||| || || || |||| || Sbjct 9535 TGATGGTATTGTTGGTGAAAACTTAATTGAAAACTTCTCGACTGAAGTTCAACTTCCCGA 9476 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 ||||| || || ||||| ||||| || || ||||| ||||||||||| | ||| Sbjct 9475 AGCCAAATCATTCTACGGTTTCCAAATCATGATGGAAAACATTCATTCAGAAACCTACTC 9416 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAG-ACT-ATTTTCTTCT 269053 | ||||||| || ||||| ||| | ||| | | | ||| | ||| |||| | | Sbjct 9415 TTTATTAATTGAAACTTACATAAAAGAT--CCTCAAGAAGCCGATTACTTATTTAATGCC 9358 Query 269054 ATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT 269113 || | ||| ||| | ||| ||| |||| |||||| | |||||||| | ||| Sbjct 9357 ATTGCCAATATTCCATGTATTCAAAAGAAAGCTGACTGGGCTATCAAATGGATTCAAGAT 9298 Query 269114 AGCGC-GCCTT--ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170 | ||||| | || ||||| |||||||| ||||| || || |||||||| |||||| Sbjct 9297 GATGAAGCCTTGTATGGTGAAAGATTAGTTGCCTTTGCTGCAGTTGAAGGTATTTTCTTT 9238 Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230 || || ||||| ||||||| |||||||| || ||||| | |||||||| || ||| Sbjct 9237 AGTGGTTCATTTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTAATGCCAGGGTTGACT 9178 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290 ||||| ||||| ||||| |||| || |||||||||||| ||||| ||||||||||| Sbjct 9177 TTCTCAAACGAGTTGATTTGCAGAGATGAAGGTTTACACACTGACTTTGCTTGTTTATTG 9118 Query 269291 TTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCA 269350 ||| || ||| | | ||| ||| |||| ||| | || | ||||||| | | Sbjct 9117 TTTGCTCATT---TGCAAAACAGACCATCTCCAGAGATTGTTGAAAAAATTATTACTGAA 9061 Query 269351 GCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTT-ATCGGTAT 269409 |||||| ||| || | ||| | | || || ||||| || | | ||| | ||||| Sbjct 9060 GCTGTTGATGTTGAGAAAGAGTACTTTACCGATGCTCT-TCCAGTGTCCTTGTTGGGTAT 9002 Query 269410 GAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTT 269469 ||| | || | |||| |||| ||| | ||||| ||||||||||| || || | || Sbjct 9001 GAACTGTAACTTGATGTGTCAATACATTGAATTCGTCGCTGATAGATTGTTGTTGGCCTT 8942 Query 269470 AGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATT 269529 ||| | ||| ||| || ||| ||||| ||| ||| ||||| || || || || Sbjct 8941 AGGTAACAAGAAAGTATACAATGTTACTAATCCATTTGATTTCATGGAAAACATTTCTTT 8882 Query 269530 AGAAGGTAAGGCTAATTTCTTCGAGAA 269556 | |||||| | |||||||| || || Sbjct 8881 GGCTGGTAAGACCAATTTCTTTGAAAA 8855 >seq65 Length=44577 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | || | || || |||||||| || || || || ||||||||| Sbjct 11345 CCACCTCTTAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 11404 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||||||||| | |||||| ||||||||||||| || ||||| || || || Sbjct 11405 AAAGTTCTACCGTCTTCCAATTGTTTACCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 11464 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| || ||||| || | || ||||| || | || || || ||| || Sbjct 11465 ATACCTTCTTTGTCTTGAATTTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 11524 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||| || |||||||| | || || || || || ||||| Sbjct 11525 TCTAAAGTAATGGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 11571 >seq2 Length=135431 Score = 105 bits (116), Expect = 2e-17 Identities = 307/467 (66%), Gaps = 13/467 (3%) Strand=Plus/Minus Query 269129 GAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCT 269188 || || || ||||| ||||| || || ||||||||||| || || || ||||| || Sbjct 59806 GAGAGATTGGTTGCGTTTGCTGCCGTTGAAGGTATATTTTTCAGTGGTTCGTTTGCAGCA 59747 Query 269189 ATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATA 269248 || || ||||| |||||||| || | ||||||||||| || || || || |||||||| Sbjct 59746 ATTTTCTGGTTAAAGAAAAGGGGGTTGATGCCAGGATTGACATTTTCGAATGAATTGATT 59687 Query 269249 AGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCA 269308 || | |||||||| | ||| || | || ||||| ||||| || ||| | Sbjct 59686 TGCCGAGACGAAGGGATTCACACGGATTATGCCTGTTTGTTATT--CT-CGTATTTAAAG 59630 Query 269309 CACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACA 269368 | |||||||||| ||| | | | |||| || ||||| || | || | | Sbjct 59629 AATAAACCTTCTCCAGAAATCATTGAGAAAATCATTACCGAGGCTGTGACTATTGAGAAA 59570 Query 269369 GAATTTCTAACGGAAGCTCTATC--TATCGATCTTATCGGTATGAATAGCAAATCGATGA 269426 ||| | | | || || || | |||| | | | || |||||| | | | |||| Sbjct 59569 AAATATTTCAGCGATGCGCTTCCAGTATC--TTTATTGGGAATGAATTGTGACTTGATGT 59512 Query 269427 TAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAAT 269486 | ||| || | || || ||||| |||| | ||| | || || | |||||| | Sbjct 59511 GCCAGTATGTTGAATTTGTTGCTGATCGATTATTAGTGGCCTTTGG---AAATAAAAAGT 59455 Query 269487 AT---AACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTA 269543 || || ||| ||||| ||| ||| ||||| ||||| || || | ||||| ||| Sbjct 59454 ATTACAATGTTACTAATCCATTTGATTTCATGGAAAATATCTCCTTGGCTGGTAAAACTA 59395 Query 269544 ATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATG 269590 ||||||| || ||| | || | | || || || ||||||||| Sbjct 59394 ATTTCTTTGAAAAGAGAGTTTCTGATTACCAAAAGGCCGGTGTAATG 59348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151385240955536