Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23]
892 sequences; 13,998,205 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq57 228 1e-54
seq103 159 4e-34
seq4 98.7 1e-15
>seq57
Length=48952
Score = 228 bits (252), Expect = 1e-54
Identities = 343/498 (69%), Gaps = 51/498 (10%)
Strand=Plus/Plus
Query 6808 AATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGA 6867
|||||||| |||| || | ||||||||| ||||||| ||| ||||| |||| ||||||
Sbjct 16965 AATTGTTCCTTTAAGGCATCTATATGATCCAAATAAACATGTGCATCACCTAAAGTATGA 17024
Query 6868 ATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAA 6927
|| ||||| || | |||||| || | || ||||| | | ||||| || || ||
Sbjct 17025 ATGAATTCGCCACAGTCCATATCCACCACATGTGCAATCATCTTAGTTAACAACGCGTAG 17084
Query 6928 GAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAA 6987
|| || | |||||| ||||||||||| |||||||| ||||||||||| || ||||
Sbjct 17085 GATGCAATATTAAATGGTACACCTAACCCCATATCACAAGATCTTTGATACAATAAACAA 17144
Query 6988 GATAA------------------------------AATATT---GTCTA---------TA 7005
||||| | |||| |||| ||
Sbjct 17145 GATAATTTTGGTTTGGCGGTTTTAGCTTGTTTGGGATTATTTGAGTCTGGTTGAGATGTA 17204
Query 7006 G---------CATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATA 7056
| ||||||||||||| |||||||||||||||||||| | | | | | |
Sbjct 17205 GGGAAGTTCACATAAAATTGACAAAATACATGACATGGAGGTAATGCCATTTTAGCAAAA 17264
Query 7057 TCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTT 7116
|| | |||||||||||||| ||| | ||| | |||||||| ||||||||||| ||||||
Sbjct 17265 TCTGGTGGATTCCAAGCAGACATGATAATTCTTCTATCATAAGGATTTGTTTTCAATTTT 17324
Query 7117 GTTATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATA 7176
| |||| |||||| ||||| | || || || ||||| || || ||||| | ||
Sbjct 17325 TTAATAACATCTTGTAACTGATCAAATCCTTGGCCACTATAATCAGAATCACAATCTTTA 17384
Query 7177 TAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCA 7236
|| | || ||||||||||||||||| || ||||||| || || ||||| ||||| |
Sbjct 17385 TATTCTGCACCAAAATGTCTCCATTGGAAACCATAAACTGGTCCCAAATCCCCTTCACGA 17444
Query 7237 CGATGATTAAATCCTAAT 7254
|||||| | |||||||||
Sbjct 17445 CGATGAGTCAATCCTAAT 17462
>seq103
Length=35786
Score = 159 bits (176), Expect = 4e-34
Identities = 321/475 (68%), Gaps = 21/475 (4%)
Strand=Plus/Minus
Query 164495 AAAAATTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTA 164554
||||||||| | ||||||| ||||| | |||||| ||||||||| ||| ||||
Sbjct 33545 AAAAATTAGATTATAAACATTGTAAAGGTTTATTATTATTTGGACCTCCAGGTACTGGTA 33486
Query 164555 AAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTG 164611
|||| || || ||||| | ||| || | | ||| | || || |||||||
Sbjct 33485 AAACTTTGATTGCTCG-TAAATTATCGAAAATGCTTAATGGTAAAGAACCA--AAAATTG 33429
Query 164612 TTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGT 164671
| |||||||| ||| | |||| |||||||| |||| || |||| ||| || | || |
Sbjct 33428 TCAATGGTCCAGAAATGTTGAGTAAATATGTTGGTGCATCTGAAGAAAATATTCGTAATT 33369
Query 164672 TGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTA 164731
| ||| | || ||||||| |||| | || | |||| || | | ||||||||||
Sbjct 33368 TATTTAAAGATGCTGAAGCAGAATATAAATTAAAAGGTGAAGATTCAGATTTACATGTTA 33309
Query 164732 TTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTG-------ATAATAT---- 164780
|| | |||||||| | ||| || ||| |||| || | || || | ||
Sbjct 33308 TTATATTTGATGAATTGGATTCTGTTTTCAAACAAAGAGGATCAGGGAAATCAGATGGCA 33249
Query 164781 ----TATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCT 164836
| || |||| || || ||||| || | || ||||| ||||| || || |
Sbjct 33248 CTGGTGTTGGTGATAATGTTGTCAATCAATTATTATCGAAAATGGATGGGGTTGACCAAT 33189
Query 164837 TAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTAT 164896
| ||||||||||| || | |||||||| || || ||||| |||||| ||||||||
Sbjct 33188 TGAATAATATTTTGGTTATTGGTATGACAAATCGTTTAGATTTGATTGATACTGCTTTAT 33129
Query 164897 TACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGG 164951
|| |||| ||| |||| ||| | |||| |||||| ||||| || || ||||
Sbjct 33128 TAAGACCAGGTAGATTTGAAATTCAAATTGAAATATCTTTACCTGATGAAAAAGG 33074
>seq4
Length=109863
Score = 98.7 bits (108), Expect = 1e-15
Identities = 130/179 (73%), Gaps = 1/179 (1%)
Strand=Plus/Minus
Query 19330 TAAAATTAA-ATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTA 19388
||||| ||| | | ||| | ||||| | || |||| || ||||||||||| ||
Sbjct 39668 TAAAAGTAAGAATGAGAACAACTAAAGTTCCACAAATTGGGGATAAGTTTGCCTCGAGAC 39609
Query 19389 CTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAG 19448
| ||||||||| || |||| ||| ||| | || ||||||||||||||||| |
Sbjct 39608 ACGGTCAAAAAGGTACTATTGGTGTGACATATAGACATGAAGATATGCCTTTTACAGCCG 39549
Query 19449 ATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507
| ||||| || || ||| | ||||| ||||| |||||| ||||| ||| |||||| ||
Sbjct 39548 AAGGTATTGTTCCAGATTTAATTATCAACCCTCATGCTATTCCATCTCGTATGACGGTT 39490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595865356027200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |