Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq57 228 1e-54 seq103 159 4e-34 seq4 98.7 1e-15 >seq57 Length=48952 Score = 228 bits (252), Expect = 1e-54 Identities = 343/498 (69%), Gaps = 51/498 (10%) Strand=Plus/Plus Query 6808 AATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGA 6867 |||||||| |||| || | ||||||||| ||||||| ||| ||||| |||| |||||| Sbjct 16965 AATTGTTCCTTTAAGGCATCTATATGATCCAAATAAACATGTGCATCACCTAAAGTATGA 17024 Query 6868 ATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAA 6927 || ||||| || | |||||| || | || ||||| | | ||||| || || || Sbjct 17025 ATGAATTCGCCACAGTCCATATCCACCACATGTGCAATCATCTTAGTTAACAACGCGTAG 17084 Query 6928 GAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAA 6987 || || | |||||| ||||||||||| |||||||| ||||||||||| || |||| Sbjct 17085 GATGCAATATTAAATGGTACACCTAACCCCATATCACAAGATCTTTGATACAATAAACAA 17144 Query 6988 GATAA------------------------------AATATT---GTCTA---------TA 7005 ||||| | |||| |||| || Sbjct 17145 GATAATTTTGGTTTGGCGGTTTTAGCTTGTTTGGGATTATTTGAGTCTGGTTGAGATGTA 17204 Query 7006 G---------CATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATA 7056 | ||||||||||||| |||||||||||||||||||| | | | | | | Sbjct 17205 GGGAAGTTCACATAAAATTGACAAAATACATGACATGGAGGTAATGCCATTTTAGCAAAA 17264 Query 7057 TCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTT 7116 || | |||||||||||||| ||| | ||| | |||||||| ||||||||||| |||||| Sbjct 17265 TCTGGTGGATTCCAAGCAGACATGATAATTCTTCTATCATAAGGATTTGTTTTCAATTTT 17324 Query 7117 GTTATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATA 7176 | |||| |||||| ||||| | || || || ||||| || || ||||| | || Sbjct 17325 TTAATAACATCTTGTAACTGATCAAATCCTTGGCCACTATAATCAGAATCACAATCTTTA 17384 Query 7177 TAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCA 7236 || | || ||||||||||||||||| || ||||||| || || ||||| ||||| | Sbjct 17385 TATTCTGCACCAAAATGTCTCCATTGGAAACCATAAACTGGTCCCAAATCCCCTTCACGA 17444 Query 7237 CGATGATTAAATCCTAAT 7254 |||||| | ||||||||| Sbjct 17445 CGATGAGTCAATCCTAAT 17462 >seq103 Length=35786 Score = 159 bits (176), Expect = 4e-34 Identities = 321/475 (68%), Gaps = 21/475 (4%) Strand=Plus/Minus Query 164495 AAAAATTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTA 164554 ||||||||| | ||||||| ||||| | |||||| ||||||||| ||| |||| Sbjct 33545 AAAAATTAGATTATAAACATTGTAAAGGTTTATTATTATTTGGACCTCCAGGTACTGGTA 33486 Query 164555 AAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTG 164611 |||| || || ||||| | ||| || | | ||| | || || ||||||| Sbjct 33485 AAACTTTGATTGCTCG-TAAATTATCGAAAATGCTTAATGGTAAAGAACCA--AAAATTG 33429 Query 164612 TTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGT 164671 | |||||||| ||| | |||| |||||||| |||| || |||| ||| || | || | Sbjct 33428 TCAATGGTCCAGAAATGTTGAGTAAATATGTTGGTGCATCTGAAGAAAATATTCGTAATT 33369 Query 164672 TGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTA 164731 | ||| | || ||||||| |||| | || | |||| || | | |||||||||| Sbjct 33368 TATTTAAAGATGCTGAAGCAGAATATAAATTAAAAGGTGAAGATTCAGATTTACATGTTA 33309 Query 164732 TTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTG-------ATAATAT---- 164780 || | |||||||| | ||| || ||| |||| || | || || | || Sbjct 33308 TTATATTTGATGAATTGGATTCTGTTTTCAAACAAAGAGGATCAGGGAAATCAGATGGCA 33249 Query 164781 ----TATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCT 164836 | || |||| || || ||||| || | || ||||| ||||| || || | Sbjct 33248 CTGGTGTTGGTGATAATGTTGTCAATCAATTATTATCGAAAATGGATGGGGTTGACCAAT 33189 Query 164837 TAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTAT 164896 | ||||||||||| || | |||||||| || || ||||| |||||| |||||||| Sbjct 33188 TGAATAATATTTTGGTTATTGGTATGACAAATCGTTTAGATTTGATTGATACTGCTTTAT 33129 Query 164897 TACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGG 164951 || |||| ||| |||| ||| | |||| |||||| ||||| || || |||| Sbjct 33128 TAAGACCAGGTAGATTTGAAATTCAAATTGAAATATCTTTACCTGATGAAAAAGG 33074 >seq4 Length=109863 Score = 98.7 bits (108), Expect = 1e-15 Identities = 130/179 (73%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 19330 TAAAATTAA-ATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTA 19388 ||||| ||| | | ||| | ||||| | || |||| || ||||||||||| || Sbjct 39668 TAAAAGTAAGAATGAGAACAACTAAAGTTCCACAAATTGGGGATAAGTTTGCCTCGAGAC 39609 Query 19389 CTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAG 19448 | ||||||||| || |||| ||| ||| | || ||||||||||||||||| | Sbjct 39608 ACGGTCAAAAAGGTACTATTGGTGTGACATATAGACATGAAGATATGCCTTTTACAGCCG 39549 Query 19449 ATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507 | ||||| || || ||| | ||||| ||||| |||||| ||||| ||| |||||| || Sbjct 39548 AAGGTATTGTTCCAGATTTAATTATCAACCCTCATGCTATTCCATCTCGTATGACGGTT 39490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595865356027200