Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq243 250 3e-61 seq2 163 3e-35 >seq243 Length=19219 Score = 250 bits (276), Expect = 3e-61 Identities = 649/989 (66%), Gaps = 26/989 (3%) Strand=Plus/Plus Query 21120 TATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCttt---------ttttG 21170 |||| |||| ||||| |||| || | |||| ||| | ||||||| ||| | Sbjct 8760 TATTGTTTTAGAAATCTTCATCAAAGGTGAAAGCATCAGCTTCTTTGTTCTCTGTTTTGG 8819 Query 21171 ACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTT 21230 ||||| || |||||| || || |||||||||||| || ||||| ||||| || Sbjct 8820 CCATAACACCAGCTTTTTGGTAGTCTGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAG 8879 Query 21231 CCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAAC 21290 |||| || || |||||| |||||||||||||| | || ||| ||| || || Sbjct 8880 CCAAAGAAATGTTTTCCATGAAATCAAATGGATTAGTAACATTGTATACTTTCTTGTTAC 8939 Query 21291 CCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAAT 21350 | | | | || |||||||| || || ||||| || ||||||||||| || | ||| | Sbjct 8940 CTAAGGCCAACAACAATCTATCAGCGACGAATTCAATGTATTGACACATCAAGTTACAGT 8999 Query 21351 TCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGG 21410 ||||||| | ||| || |||||||| | || || | ||| || | | || | Sbjct 9000 TCATACCCAACAAGGACACTGGAAGAGCATCGGTAAAGTACTCTTTCTCAACATCAACAG 9059 Query 21411 CTTCAACAATTATATTT---ATTATC-CT--AGATGTACTAGGGGGATACAATAATTGTT 21464 ||||| ||| || ||| | ||| || ||||| || | | ||| || Sbjct 9060 CTTCAGTAATAATTTTTTCAACAATCTCTGGAGATGGTCT---GTTTTGCAAA---TGAG 9113 Query 21465 TAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAG 21524 ||||| ||||| ||||| ||| || ||||||||||| || | || || || || | Sbjct 9114 CAAACAATAAACAAGCAAAGTCAGTGTGTAAACCTTCATCTCTGCAAATCAACTCGTTTG 9173 Query 21525 AAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTC 21584 | || || || || |||||||| ||||||||||| ||||| || || || ||||||| | Sbjct 9174 AGAAAGTCAACCCTGGCATTAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAAC 9233 Query 21585 CTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATT 21644 | ||||||||| || ||||| |||||||| |||||||||| |||||| || | || Sbjct 9234 CACTAAAGAAAATACCTTCAACTGCAGCAAAGGCAACTAATCTTTCACCATACAAGGCTT 9293 Query 21645 CTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTAT 21704 | | ||| |||||||| ||||| | || || | || |||||| ||| | Sbjct 9294 CATCATCTTGAATCCATTTGATAGCCCAGTCAGCTTTCTTTTGAATACATGGAATATTGG 9353 Query 21705 CAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNN 21764 |||| || || || | | || ||| | ||| ||||| Sbjct 9354 CAATGGCATTAAATAAGTAATCGGCTTCTTGAGGATCTTTTATGTAAGTTTCAATTAATA 9413 Query 21765 NACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTG 21824 | || |||| ||||| || ||||| ||| || || || ||||| || || | | Sbjct 9414 AAGAGTAGGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCGTAGAATGATTTGG 9473 Query 21825 CCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCAT 21884 | || | | |||||| || | | || || | ||||||||| || || |||| Sbjct 9474 CTTCGGGAAGTTGAACTTCAGTCGAGAAGTTTTCAATTAAGTTTTCACCAACAATACCAT 9533 Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT- 21943 || || || ||||||||||||| | | |||||||| ||| || || | ||| Sbjct 9534 CAGAAGCAGCGAAAAATGCCAATACTCTAGAGACAAAATATCTTTCATTTTCATTCAATT 9593 Query 21944 --TTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAG 22001 || ||||| || |||||||| ||||| | |||||| | ||||| || || Sbjct 9594 TGTTATTCCAGTCATCCAAATCTTTACTCAAATCGATTTCTTCGGCGGTCCAGAAAGAAG 9653 Query 22002 CAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACC 22061 | ||| || ||||| | |||| || |||| ||| | ||||| || || ||| | | Sbjct 9654 CTTCAGCTTTCTTATAAAAGTTCCAAATTTCATGGTATCTGATTGGGAACATCACATAAC 9713 Query 22062 TGTTATTTG-ATTCAACTAAAAGTGGTTC 22089 | |||| |||||| || | |||||| Sbjct 9714 -GACGTTTGTTTTCAACCAATAATGGTTC 9741 >seq2 Length=135431 Score = 163 bits (180), Expect = 3e-35 Identities = 306/445 (69%), Gaps = 6/445 (1%) Strand=Plus/Plus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 ||||| |||||| |||||| ||||| || ||||| || || || |||| || ||| | Sbjct 59361 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAATTAGTTTTACCAGCCAAGGAGATATTT 59420 Query 21245 TCCATAAAATCAAATGGATT-TTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| |||||||||||||| | | ||| |||| ||| ||| || | | ||| Sbjct 59421 TCCATGAAATCAAATGGATTAGTAACATTGTAATACTTT-TTATTTCCAAAGGCCACTAA 59479 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 ||||| ||| || |||||||| | ||| || ||||| || ||||||||||| || | || Sbjct 59480 TAATCGATCAGCAACAAATTCAACATACTGGCACATCAAGTCACAATTCATTCCCAATAA 59539 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 ||| ||||| || | | ||| | ||| || |||| || || || ||| || Sbjct 59540 AGATACTGGAAGCGCATCGCTGAAATATTTTTTCTCAATAGTCACAGCCTCGGTAATGAT 59599 Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483 || || | || | ||| || | ||| | || | |||||| ||| | Sbjct 59600 TTTCTCAATGATTTCTGGAGAAGGTTTATTCTTTAAATACGAGAATAACAAACAGGCATA 59659 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 ||| || | ||||| || | | || |||||||| |||||||| || || ||||| Sbjct 59660 ATCCGTGTGAATCCCTTCGTCTCGGCAAATCAATTCATTCGAAAATGTCAATCCTGGCAT 59719 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATG--CTCCTGAAAAGAAAATGCCC 21601 || || || || |||||||| || |||| ||||| | | |||||| || || || Sbjct 59720 CAACCCCCTTTTCTTTAACCAGAAAATTGCTGCAAACGAACCACTGAAA--AATATACCT 59777 Query 21602 TCAACGGCAGCAAATGCAACTAATC 21626 |||||||||||||| ||||| |||| Sbjct 59778 TCAACGGCAGCAAACGCAACCAATC 59802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531894869306080