Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20dubliniensis_20[genbank_20GCA_5F000647575.1_202014-04-23] 892 sequences; 13,998,205 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 118 3e-21 seq243 116 1e-20 >seq2 Length=135431 Score = 118 bits (130), Expect = 3e-21 Identities = 306/460 (67%), Gaps = 15/460 (3%) Strand=Plus/Minus Query 22499 TTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGC 22558 |||| ||||||| |||||||| || || || ||| | ||| ||||| || ||| Sbjct 59796 TTGCGTTTGCTGCCGTTGAAGGTATATTTTTCAGTGGTTCGTTTGCAGCAATTTTCTGGT 59737 Query 22559 TaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATG 22618 |||| ||| | | | ||||| || | || ||||| ||||| || ||| ||||||| | Sbjct 59736 TAAAGAAAAGGGGGTTGATGCCAGGATTGACATTTTCGAATGAATTGATTTGCCGAGACG 59677 Query 22619 AGGGTCTTCATACCGATTTTGCGTGTATGCTATA-TCGGAATCATATCATTCATAAACTT 22677 | || |||| || |||| ||| ||| || ||| ||| | | | | || || ||| Sbjct 59676 AAGGGATTCACACGGATTATGCCTGTTTGTTATTCTCGTATTTAAAGAATA---AACCTT 59620 Query 22678 CCATATGAAACTGTACTTGATA---TTATTACAAATGCAGTTGAACTTGAACGTCTATTT 22734 | | |||| | |||| | | ||||| | || || |||| | | | Sbjct 59619 CTCCA-GAAA---TCATTGAGAAAATCATTACCGAGGCTGTGACTATTGA--GAAAAAAT 59566 Query 22735 ATTT--GCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACAT 22792 |||| |||| ||| | |||||| | | | || || ||| || | ||| | | Sbjct 59565 ATTTCAGCGATGCGCTTCCAGTATCTTTATTGGGAATGAATTGTGACTTGATGTGCCAGT 59506 Query 22793 ATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACG 22852 || || |||||||||| ||||| ||||| | | | || || |||| |||| || | Sbjct 59505 ATGTTGAATTTGTTGCTGATCGATTATTAGTGGCCTTTGGAAATAAAAAGTATTACAATG 59446 Query 22853 TCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCG 22912 | |||||||||||| | |||||| ||| || | | || || || |||||||| | Sbjct 59445 TTACTAATCCATTTGATTTCATGGAAAATATCTCCTTGGCTGGTAAAACTAATTTCTTTG 59386 Query 22913 AAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGA 22952 |||| |||||| ||| |||||||| || ||||| ||||| Sbjct 59385 AAAAGAGAGTTTCTGATTACCAAAAGGCCGGTGTAATGGA 59346 >seq243 Length=19219 Score = 116 bits (128), Expect = 1e-20 Identities = 481/745 (65%), Gaps = 24/745 (3%) Strand=Plus/Minus Query 22219 GCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCT 22278 ||||| || ||| | | || ||||| ||| ||| || || | || || | || Sbjct 9552 GCATTTTTCGCTGCTTCTGATGGTATTGTTGGTGAAAACTTAATTGAAAACTTCTCGACT 9493 Query 22279 GAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTT 22338 ||| ||||| || || |||| || ||||| ||| | ||||| ||||| ||||| || Sbjct 9492 GAAGTTCAACTTCCCGAAGCCAAATCATTCTACGGTTTCCAAATCATGATGGAAAACATT 9433 Query 22339 CACGCGGAAACATATTCTATGATGCTACAGTCACTCGTAGAAGATAAAGACGAACAACGA 22398 || | ||||| || ||| | | | | | | || ||||| | ||| ||| Sbjct 9432 CATTCAGAAACCTACTCTTTATTAATTGAAACTTACATAAAAGATCCTCAAGAAGC-CGA 9374 Query 22399 A-ACTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCT 22457 ||||||| || ||| || |||| || ||| | || || || || ||||| | Sbjct 9373 TTACTTATTTAATGCCATTGCCAATATTCCATGTATTCAAAAGAAAGCTGACTGGGCTAT 9314 Query 22458 GAAATGGATG-AACA--ATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGT 22514 |||||||| || | ||||| | | | ||| | | |||| ||||||| || Sbjct 9313 CAAATGGATTCAAGATGATGAAGCCTTGTATGGTGAAAGATTAGTTGCCTTTGCTGCAGT 9254 Query 22515 TGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAAT 22574 |||||| ||||||||| ||| ||||| | | ||||| ||| | ||||| | | | Sbjct 9253 TGAAGGTATTTTCTTTAGTGGTTCATTTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTT 9194 Query 22575 TATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGA 22634 ||||| || | || || ||||| ||||| ||| || ||||||| ||| | || || || Sbjct 9193 AATGCCAGGGTTGACTTTCTCAAACGAGTTGATTTGCAGAGATGAAGGTTTACACACTGA 9134 Query 22635 TTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATAT---GAAACTGT 22691 ||||| ||| | | | | |||| | || || |||| | || | ||| Sbjct 9133 CTTTGCTTGTTTATTGTTTGC---TCATTTG---CAAAACAGACCATCTCCAGAGATTGT 9080 Query 22692 ACTTGATATTATTACAAATGCAGTTGAACTTGA--ACGTCTATTTATTTGCGAGGCGTTA 22749 | |||||||| | || ||||| |||| | | || || | ||| || | Sbjct 9079 TGAAAAAATTATTACTGAAGCTGTTGATGTTGAGAAAGAGTACTT--TACCGATGCTCTT 9022 Query 22750 CCAGTAAGTC--TCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTG 22807 ||||| ||| | | ||||| || | | ||| || ||| ||| |||| || | Sbjct 9021 CCAGT--GTCCTTGTTGGGTATGAACTGTAACTTGATGTGTCAATACATTGAATTCGTCG 8964 Query 22808 CAGATCGTCTATTAATTTCACTCGGTTATGC-AAAGCATTATAACGTCGTTAATCCATTT 22866 | ||| | | || | | | ||| | |||| || | || || |||||||||| Sbjct 8963 CTGATAGATTGTTGTTGGCCTTAGGTAACAAGAAAGTAT-ACAATGTTACTAATCCATTT 8905 Query 22867 GAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGT 22926 || | |||||| ||||| | | || |||||||||||||| |||||||||||| Sbjct 8904 GATTTCATGGAAAACATTTCTTTGGCTGGTAAGACCAATTTCTTTGAAAAAAGAGTTTCA 8845 Query 22927 GAATACCAAAAAGCAGGTGTTATGG 22951 || ||||||||||| |||||||||| Sbjct 8844 GACTACCAAAAAGCTGGTGTTATGG 8820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303338704297544